Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1033

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1032 and rpsO are separated by 126 nucleotidesrpsO and Shewana3_1034 are separated by 86 nucleotides Shewana3_1032: Shewana3_1032 - tRNA pseudouridine synthase B (RefSeq), at 1,205,386 to 1,206,339 _1032 Shewana3_1033: rpsO - 30S ribosomal protein S15 (RefSeq), at 1,206,466 to 1,206,735 rpsO Shewana3_1034: Shewana3_1034 - diguanylate cyclase/phosphodiesterase (RefSeq), at 1,206,822 to 1,208,846 _1034 Position (kb) 1206 1207Strain fitness (log2 ratio) -1 0 1at 1205.667 kb on + strand, within Shewana3_1032at 1206.307 kb on + strandat 1206.889 kb on + strandat 1207.138 kb on + strand, within Shewana3_1034at 1207.192 kb on - strand, within Shewana3_1034

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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1,205,667 + Shewana3_1032 0.29 +0.4
1,206,307 + +0.8
1,206,889 + -1.2
1,207,138 + Shewana3_1034 0.16 -0.8
1,207,192 - Shewana3_1034 0.18 -0.0

Or see this region's nucleotide sequence