Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0953

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0952 and Shewana3_0953 are separated by 408 nucleotidesShewana3_0953 and Shewana3_0954 are separated by 174 nucleotides Shewana3_0952: Shewana3_0952 - TonB-dependent siderophore receptor (RefSeq), at 1,115,429 to 1,117,618 _0952 Shewana3_0953: Shewana3_0953 - xanthine/uracil/vitamin C permease (RefSeq), at 1,118,027 to 1,119,316 _0953 Shewana3_0954: Shewana3_0954 - gamma-glutamyl kinase (RefSeq), at 1,119,491 to 1,120,609 _0954 Position (kb) 1118 1119 1120Strain fitness (log2 ratio) -1 0 1 2at 1117.116 kb on + strand, within Shewana3_0952at 1117.153 kb on - strand, within Shewana3_0952at 1117.160 kb on + strand, within Shewana3_0952at 1117.174 kb on + strand, within Shewana3_0952at 1117.312 kb on + strand, within Shewana3_0952at 1117.346 kb on + strand, within Shewana3_0952at 1117.354 kb on - strand, within Shewana3_0952at 1117.354 kb on - strand, within Shewana3_0952at 1117.513 kb on + strandat 1117.587 kb on + strandat 1117.698 kb on + strandat 1117.734 kb on - strandat 1117.923 kb on + strandat 1118.067 kb on + strandat 1118.214 kb on - strand, within Shewana3_0953at 1118.259 kb on - strand, within Shewana3_0953at 1118.299 kb on - strand, within Shewana3_0953at 1118.411 kb on - strand, within Shewana3_0953at 1118.906 kb on + strand, within Shewana3_0953at 1118.906 kb on + strand, within Shewana3_0953at 1118.906 kb on + strand, within Shewana3_0953at 1118.906 kb on + strand, within Shewana3_0953at 1119.081 kb on - strand, within Shewana3_0953at 1119.096 kb on + strand, within Shewana3_0953at 1119.152 kb on - strand, within Shewana3_0953at 1119.545 kb on + strandat 1119.594 kb on - strandat 1119.606 kb on + strand, within Shewana3_0954at 1119.816 kb on + strand, within Shewana3_0954at 1119.816 kb on + strand, within Shewana3_0954at 1119.824 kb on - strand, within Shewana3_0954at 1119.984 kb on - strand, within Shewana3_0954at 1120.048 kb on + strand, within Shewana3_0954at 1120.053 kb on + strand, within Shewana3_0954

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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1,117,116 + Shewana3_0952 0.77 -0.0
1,117,153 - Shewana3_0952 0.79 +0.3
1,117,160 + Shewana3_0952 0.79 -0.7
1,117,174 + Shewana3_0952 0.80 -0.3
1,117,312 + Shewana3_0952 0.86 -0.4
1,117,346 + Shewana3_0952 0.88 +0.1
1,117,354 - Shewana3_0952 0.88 +1.9
1,117,354 - Shewana3_0952 0.88 -0.1
1,117,513 + +0.4
1,117,587 + -0.3
1,117,698 + +0.3
1,117,734 - +0.3
1,117,923 + -0.4
1,118,067 + -0.7
1,118,214 - Shewana3_0953 0.14 -0.3
1,118,259 - Shewana3_0953 0.18 -0.1
1,118,299 - Shewana3_0953 0.21 +0.6
1,118,411 - Shewana3_0953 0.30 +0.9
1,118,906 + Shewana3_0953 0.68 +1.4
1,118,906 + Shewana3_0953 0.68 +0.0
1,118,906 + Shewana3_0953 0.68 +0.1
1,118,906 + Shewana3_0953 0.68 +0.8
1,119,081 - Shewana3_0953 0.82 -0.2
1,119,096 + Shewana3_0953 0.83 +0.0
1,119,152 - Shewana3_0953 0.87 +0.8
1,119,545 + +0.4
1,119,594 - +0.9
1,119,606 + Shewana3_0954 0.10 +0.4
1,119,816 + Shewana3_0954 0.29 +0.5
1,119,816 + Shewana3_0954 0.29 +0.1
1,119,824 - Shewana3_0954 0.30 +0.1
1,119,984 - Shewana3_0954 0.44 +0.3
1,120,048 + Shewana3_0954 0.50 +0.4
1,120,053 + Shewana3_0954 0.50 +0.7

Or see this region's nucleotide sequence