Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0952 and Shewana3_0953 are separated by 408 nucleotides Shewana3_0953 and Shewana3_0954 are separated by 174 nucleotides
Shewana3_0952: Shewana3_0952 - TonB-dependent siderophore receptor (RefSeq), at 1,115,429 to 1,117,618
_0952
Shewana3_0953: Shewana3_0953 - xanthine/uracil/vitamin C permease (RefSeq), at 1,118,027 to 1,119,316
_0953
Shewana3_0954: Shewana3_0954 - gamma-glutamyl kinase (RefSeq), at 1,119,491 to 1,120,609
_0954
Position (kb)
1118
1119
1120 Strain fitness (log2 ratio)
-1
0
1
2 at 1117.116 kb on + strand, within Shewana3_0952 at 1117.153 kb on - strand, within Shewana3_0952 at 1117.160 kb on + strand, within Shewana3_0952 at 1117.174 kb on + strand, within Shewana3_0952 at 1117.312 kb on + strand, within Shewana3_0952 at 1117.346 kb on + strand, within Shewana3_0952 at 1117.354 kb on - strand, within Shewana3_0952 at 1117.354 kb on - strand, within Shewana3_0952 at 1117.513 kb on + strand at 1117.587 kb on + strand at 1117.698 kb on + strand at 1117.734 kb on - strand at 1117.923 kb on + strand at 1118.067 kb on + strand at 1118.214 kb on - strand, within Shewana3_0953 at 1118.259 kb on - strand, within Shewana3_0953 at 1118.299 kb on - strand, within Shewana3_0953 at 1118.411 kb on - strand, within Shewana3_0953 at 1118.906 kb on + strand, within Shewana3_0953 at 1118.906 kb on + strand, within Shewana3_0953 at 1118.906 kb on + strand, within Shewana3_0953 at 1118.906 kb on + strand, within Shewana3_0953 at 1119.081 kb on - strand, within Shewana3_0953 at 1119.096 kb on + strand, within Shewana3_0953 at 1119.152 kb on - strand, within Shewana3_0953 at 1119.545 kb on + strand at 1119.594 kb on - strand at 1119.606 kb on + strand, within Shewana3_0954 at 1119.816 kb on + strand, within Shewana3_0954 at 1119.816 kb on + strand, within Shewana3_0954 at 1119.824 kb on - strand, within Shewana3_0954 at 1119.984 kb on - strand, within Shewana3_0954 at 1120.048 kb on + strand, within Shewana3_0954 at 1120.053 kb on + strand, within Shewana3_0954
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 1,117,116 + Shewana3_0952 0.77 -0.0 1,117,153 - Shewana3_0952 0.79 +0.3 1,117,160 + Shewana3_0952 0.79 -0.7 1,117,174 + Shewana3_0952 0.80 -0.3 1,117,312 + Shewana3_0952 0.86 -0.4 1,117,346 + Shewana3_0952 0.88 +0.1 1,117,354 - Shewana3_0952 0.88 +1.9 1,117,354 - Shewana3_0952 0.88 -0.1 1,117,513 + +0.4 1,117,587 + -0.3 1,117,698 + +0.3 1,117,734 - +0.3 1,117,923 + -0.4 1,118,067 + -0.7 1,118,214 - Shewana3_0953 0.14 -0.3 1,118,259 - Shewana3_0953 0.18 -0.1 1,118,299 - Shewana3_0953 0.21 +0.6 1,118,411 - Shewana3_0953 0.30 +0.9 1,118,906 + Shewana3_0953 0.68 +1.4 1,118,906 + Shewana3_0953 0.68 +0.0 1,118,906 + Shewana3_0953 0.68 +0.1 1,118,906 + Shewana3_0953 0.68 +0.8 1,119,081 - Shewana3_0953 0.82 -0.2 1,119,096 + Shewana3_0953 0.83 +0.0 1,119,152 - Shewana3_0953 0.87 +0.8 1,119,545 + +0.4 1,119,594 - +0.9 1,119,606 + Shewana3_0954 0.10 +0.4 1,119,816 + Shewana3_0954 0.29 +0.5 1,119,816 + Shewana3_0954 0.29 +0.1 1,119,824 - Shewana3_0954 0.30 +0.1 1,119,984 - Shewana3_0954 0.44 +0.3 1,120,048 + Shewana3_0954 0.50 +0.4 1,120,053 + Shewana3_0954 0.50 +0.7
Or see this region's nucleotide sequence