Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0952

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0951 and Shewana3_0952 are separated by 918 nucleotidesShewana3_0952 and Shewana3_0953 are separated by 408 nucleotides Shewana3_0951: Shewana3_0951 - dihydrofolate reductase (RefSeq), at 1,112,972 to 1,114,510 _0951 Shewana3_0952: Shewana3_0952 - TonB-dependent siderophore receptor (RefSeq), at 1,115,429 to 1,117,618 _0952 Shewana3_0953: Shewana3_0953 - xanthine/uracil/vitamin C permease (RefSeq), at 1,118,027 to 1,119,316 _0953 Position (kb) 1115 1116 1117 1118Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1114.879 kb on + strandat 1114.879 kb on + strandat 1115.601 kb on + strandat 1115.706 kb on - strand, within Shewana3_0952at 1115.714 kb on - strand, within Shewana3_0952at 1115.714 kb on - strand, within Shewana3_0952at 1115.797 kb on + strand, within Shewana3_0952at 1115.923 kb on + strand, within Shewana3_0952at 1115.959 kb on + strand, within Shewana3_0952at 1116.020 kb on + strand, within Shewana3_0952at 1116.030 kb on - strand, within Shewana3_0952at 1116.040 kb on + strand, within Shewana3_0952at 1116.058 kb on - strand, within Shewana3_0952at 1116.159 kb on + strand, within Shewana3_0952at 1116.444 kb on + strand, within Shewana3_0952at 1116.511 kb on + strand, within Shewana3_0952at 1116.511 kb on + strand, within Shewana3_0952at 1116.511 kb on + strand, within Shewana3_0952at 1116.511 kb on + strand, within Shewana3_0952at 1116.519 kb on - strand, within Shewana3_0952at 1116.519 kb on - strand, within Shewana3_0952at 1116.626 kb on + strand, within Shewana3_0952at 1116.809 kb on + strand, within Shewana3_0952at 1116.824 kb on + strand, within Shewana3_0952at 1116.832 kb on - strand, within Shewana3_0952at 1116.986 kb on - strand, within Shewana3_0952at 1117.116 kb on + strand, within Shewana3_0952at 1117.153 kb on - strand, within Shewana3_0952at 1117.160 kb on + strand, within Shewana3_0952at 1117.174 kb on + strand, within Shewana3_0952at 1117.312 kb on + strand, within Shewana3_0952at 1117.346 kb on + strand, within Shewana3_0952at 1117.354 kb on - strand, within Shewana3_0952at 1117.354 kb on - strand, within Shewana3_0952at 1117.513 kb on + strandat 1117.587 kb on + strandat 1117.698 kb on + strandat 1117.734 kb on - strandat 1117.923 kb on + strandat 1118.067 kb on + strandat 1118.214 kb on - strand, within Shewana3_0953at 1118.259 kb on - strand, within Shewana3_0953at 1118.299 kb on - strand, within Shewana3_0953at 1118.411 kb on - strand, within Shewana3_0953

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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1,114,879 + +1.3
1,114,879 + +1.4
1,115,601 + -0.6
1,115,706 - Shewana3_0952 0.13 -1.9
1,115,714 - Shewana3_0952 0.13 +0.3
1,115,714 - Shewana3_0952 0.13 +0.2
1,115,797 + Shewana3_0952 0.17 +1.0
1,115,923 + Shewana3_0952 0.23 -2.3
1,115,959 + Shewana3_0952 0.24 +0.5
1,116,020 + Shewana3_0952 0.27 -0.4
1,116,030 - Shewana3_0952 0.27 +0.3
1,116,040 + Shewana3_0952 0.28 -1.9
1,116,058 - Shewana3_0952 0.29 -2.1
1,116,159 + Shewana3_0952 0.33 -2.0
1,116,444 + Shewana3_0952 0.46 -0.1
1,116,511 + Shewana3_0952 0.49 +0.1
1,116,511 + Shewana3_0952 0.49 -0.9
1,116,511 + Shewana3_0952 0.49 -2.8
1,116,511 + Shewana3_0952 0.49 -1.2
1,116,519 - Shewana3_0952 0.50 -0.5
1,116,519 - Shewana3_0952 0.50 -0.6
1,116,626 + Shewana3_0952 0.55 -0.9
1,116,809 + Shewana3_0952 0.63 +0.6
1,116,824 + Shewana3_0952 0.64 +0.3
1,116,832 - Shewana3_0952 0.64 +0.0
1,116,986 - Shewana3_0952 0.71 -0.1
1,117,116 + Shewana3_0952 0.77 -0.0
1,117,153 - Shewana3_0952 0.79 +0.3
1,117,160 + Shewana3_0952 0.79 -0.7
1,117,174 + Shewana3_0952 0.80 -0.3
1,117,312 + Shewana3_0952 0.86 -0.4
1,117,346 + Shewana3_0952 0.88 +0.1
1,117,354 - Shewana3_0952 0.88 +1.9
1,117,354 - Shewana3_0952 0.88 -0.1
1,117,513 + +0.4
1,117,587 + -0.3
1,117,698 + +0.3
1,117,734 - +0.3
1,117,923 + -0.4
1,118,067 + -0.7
1,118,214 - Shewana3_0953 0.14 -0.3
1,118,259 - Shewana3_0953 0.18 -0.1
1,118,299 - Shewana3_0953 0.21 +0.6
1,118,411 - Shewana3_0953 0.30 +0.9

Or see this region's nucleotide sequence