Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0903
Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.0001 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,052,459 | - | Shewana3_0902 | 0.18 | -0.5 | |
1,052,615 | + | Shewana3_0902 | 0.34 | -1.5 | |
1,052,615 | + | Shewana3_0902 | 0.34 | -1.3 | |
1,052,623 | - | Shewana3_0902 | 0.35 | +1.4 | |
1,052,668 | + | Shewana3_0902 | 0.40 | -0.1 | |
1,052,760 | + | Shewana3_0902 | 0.49 | -0.2 | |
1,053,144 | + | Shewana3_0902 | 0.90 | +0.3 | |
1,053,144 | + | Shewana3_0902 | 0.90 | -0.2 | |
1,053,152 | - | -1.0 | |||
1,053,181 | + | +0.3 | |||
1,053,294 | + | +0.5 | |||
1,053,321 | + | -0.1 | |||
1,053,550 | + | Shewana3_0903 | 0.20 | +0.9 | |
1,053,564 | - | Shewana3_0903 | 0.22 | +1.9 | |
1,053,583 | + | Shewana3_0903 | 0.24 | +1.5 | |
1,053,727 | + | Shewana3_0903 | 0.43 | +1.6 | |
1,053,832 | + | Shewana3_0903 | 0.56 | +0.5 | |
1,053,926 | + | Shewana3_0903 | 0.69 | +0.9 | |
1,054,182 | + | +0.6 | |||
1,054,190 | - | -0.7 | |||
1,054,217 | + | -0.3 | |||
1,054,558 | + | +0.4 | |||
1,054,558 | + | -2.5 | |||
1,054,565 | - | +0.9 | |||
1,054,816 | + | -2.2 | |||
1,054,883 | - | -0.6 | |||
1,054,921 | + | -0.6 | |||
1,054,929 | - | -0.6 | |||
1,055,080 | + | Shewana3_0904 | 0.11 | -0.3 | |
1,055,152 | - | Shewana3_0904 | 0.14 | +0.3 |
Or see this region's nucleotide sequence