Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0877

Experiment: Chloramphenicol 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0001 mg/ml
1,021,602	+		Shewana3_0876	0.14	-0.3
1,021,625	-		Shewana3_0876	0.18	+0.9
1,021,693	+		Shewana3_0876	0.28	+0.3
1,021,723	-		Shewana3_0876	0.33	+0.8
1,021,748	+		Shewana3_0876	0.36	+0.7
1,021,912	-		Shewana3_0876	0.61	+0.1
1,021,912	-		Shewana3_0876	0.61	+0.7
1,021,993	+		Shewana3_0876	0.74	-1.5
1,022,116	+				-1.9
1,022,134	-				-1.0
1,022,294	+				+0.8
1,022,349	+				-0.1
1,022,350	+				-2.4
1,022,382	+				-0.2
1,022,382	+				+0.3
1,022,429	+				-1.1
1,022,503	+				-0.1
1,022,519	-				-0.0
1,022,591	+				-0.3
1,022,682	-		Shewana3_0877	0.16	+0.9
1,022,708	+		Shewana3_0877	0.18	-1.0
1,022,893	+		Shewana3_0877	0.36	+0.3
1,022,893	+		Shewana3_0877	0.36	-0.4
1,022,942	+		Shewana3_0877	0.41	-3.6
1,023,110	+		Shewana3_0877	0.58	+0.6
1,023,128	-		Shewana3_0877	0.60	-0.1
1,023,182	-		Shewana3_0877	0.65	+0.5
1,023,265	-		Shewana3_0877	0.73	-2.0
1,023,265	-		Shewana3_0877	0.73	-2.1
1,023,336	+		Shewana3_0877	0.80	+0.4
1,023,339	-		Shewana3_0877	0.81	-0.5
1,023,341	-		Shewana3_0877	0.81	-0.7
1,023,374	-		Shewana3_0877	0.84	-1.0
1,023,384	-		Shewana3_0877	0.85	-2.0
1,023,483	+				-0.1
1,023,492	-				+0.5
1,023,502	+				-0.1
1,023,521	-				+0.5
1,023,528	-				+0.3
1,023,529	+				-0.9
1,023,551	+				-1.0
1,023,571	-				-0.4
1,023,571	-				-0.5
1,023,571	-				-1.0
1,023,611	+				+0.2
1,023,619	-				+0.6
1,023,696	+				-0.2
1,023,784	+				-0.6
1,023,792	+				+0.0
1,023,792	+				+0.2
1,023,792	+				-0.1
1,023,792	+				+0.9
1,023,792	+				+0.4
1,023,797	+				-1.0
1,023,800	-				-2.3
1,023,808	+				-1.7
1,023,814	-				+1.0
1,023,828	+				+0.2
1,023,835	-				-0.8
1,023,835	-				+0.0
1,023,836	-				+0.5
1,023,836	-				+0.4
1,023,836	-				+0.3
1,023,836	-				-0.3
1,023,842	+				-0.8
1,023,846	-				+0.0
1,023,920	+				-2.1
1,023,928	-				-0.2
1,023,935	+				-0.4
1,023,935	+				-1.7
1,023,935	+				-1.1
1,023,943	-				-1.7
1,023,949	+				+1.9
1,023,949	-				+0.9
1,023,965	-				+0.3
1,024,012	+				-0.1
1,024,109	+		Shewana3_0878	0.11	+0.9
1,024,109	+		Shewana3_0878	0.11	+1.5
1,024,109	+		Shewana3_0878	0.11	+0.3
1,024,109	+		Shewana3_0878	0.11	-2.0
1,024,110	+		Shewana3_0878	0.11	-1.0
1,024,117	-		Shewana3_0878	0.12	-1.1
1,024,118	+		Shewana3_0878	0.12	-2.5
1,024,172	+		Shewana3_0878	0.15	+0.9
1,024,178	+		Shewana3_0878	0.16	-0.5
1,024,178	+		Shewana3_0878	0.16	+1.9
1,024,178	+		Shewana3_0878	0.16	+1.9
1,024,178	+		Shewana3_0878	0.16	+0.3
1,024,179	+		Shewana3_0878	0.16	-0.4
1,024,186	-		Shewana3_0878	0.16	-1.6
1,024,187	-		Shewana3_0878	0.16	-1.5
1,024,196	+		Shewana3_0878	0.17	+1.9
1,024,210	+		Shewana3_0878	0.18	+0.3
1,024,210	+		Shewana3_0878	0.18	-1.0
1,024,230	-		Shewana3_0878	0.19	-2.7
1,024,271	+		Shewana3_0878	0.21	+0.3
1,024,281	+		Shewana3_0878	0.22	+0.9
1,024,320	+		Shewana3_0878	0.24	-1.6
1,024,337	+		Shewana3_0878	0.25	-0.4
1,024,368	+		Shewana3_0878	0.27	+0.4
1,024,374	+		Shewana3_0878	0.28	-3.0
1,024,376	-		Shewana3_0878	0.28	+0.9
1,024,382	-		Shewana3_0878	0.28	+0.9
1,024,382	-		Shewana3_0878	0.28	-0.5
1,024,382	-		Shewana3_0878	0.28	+1.9
1,024,391	+		Shewana3_0878	0.29	-0.7
1,024,392	+		Shewana3_0878	0.29	-0.5
1,024,399	-		Shewana3_0878	0.29	+0.9
1,024,405	-		Shewana3_0878	0.30	-0.7
1,024,443	+		Shewana3_0878	0.32	-0.4
1,024,443	+		Shewana3_0878	0.32	+0.3
1,024,451	-		Shewana3_0878	0.32	+0.9
1,024,473	+		Shewana3_0878	0.34	-1.7
1,024,473	+		Shewana3_0878	0.34	-0.3
1,024,481	+		Shewana3_0878	0.34	+0.0
1,024,481	-		Shewana3_0878	0.34	-0.1
1,024,481	-		Shewana3_0878	0.34	-0.3
1,024,481	-		Shewana3_0878	0.34	-0.1
1,024,481	-		Shewana3_0878	0.34	-0.1
1,024,481	-		Shewana3_0878	0.34	-0.5
1,024,528	-		Shewana3_0878	0.37	+0.9