Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0839 and Shewana3_0840 are separated by 229 nucleotides Shewana3_0840 and Shewana3_0841 are separated by 3 nucleotides
Shewana3_0839: Shewana3_0839 - AFG1 family ATPase (RefSeq), at 971,433 to 972,635
_0839
Shewana3_0840: Shewana3_0840 - hypothetical protein (RefSeq), at 972,865 to 973,701
_0840
Shewana3_0841: Shewana3_0841 - peptidase M16 domain-containing protein (RefSeq), at 973,705 to 975,243
_0841
Position (kb) 972
973
974 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 971.971 kb on - strand, within Shewana3_0839 at 972.070 kb on + strand, within Shewana3_0839 at 972.070 kb on + strand, within Shewana3_0839 at 972.078 kb on - strand, within Shewana3_0839 at 972.078 kb on - strand, within Shewana3_0839 at 972.295 kb on + strand, within Shewana3_0839 at 972.318 kb on + strand, within Shewana3_0839 at 972.500 kb on + strand, within Shewana3_0839 at 972.699 kb on + strand at 972.699 kb on + strand at 972.707 kb on - strand at 972.707 kb on - strand at 972.854 kb on + strand at 972.862 kb on - strand at 972.998 kb on - strand, within Shewana3_0840 at 973.014 kb on + strand, within Shewana3_0840 at 973.015 kb on + strand, within Shewana3_0840 at 973.258 kb on + strand, within Shewana3_0840 at 973.263 kb on + strand, within Shewana3_0840 at 973.263 kb on + strand, within Shewana3_0840 at 973.388 kb on + strand, within Shewana3_0840 at 973.435 kb on + strand, within Shewana3_0840 at 973.443 kb on - strand, within Shewana3_0840 at 973.499 kb on - strand, within Shewana3_0840 at 973.499 kb on - strand, within Shewana3_0840 at 973.499 kb on - strand, within Shewana3_0840 at 973.832 kb on - strand at 973.855 kb on + strand at 973.938 kb on + strand, within Shewana3_0841 at 973.990 kb on - strand, within Shewana3_0841 at 974.055 kb on + strand, within Shewana3_0841 at 974.098 kb on - strand, within Shewana3_0841 at 974.250 kb on - strand, within Shewana3_0841 at 974.406 kb on - strand, within Shewana3_0841 at 974.424 kb on + strand, within Shewana3_0841 at 974.439 kb on - strand, within Shewana3_0841 at 974.503 kb on - strand, within Shewana3_0841 at 974.556 kb on - strand, within Shewana3_0841 at 974.556 kb on - strand, within Shewana3_0841 at 974.556 kb on - strand, within Shewana3_0841 at 974.556 kb on - strand, within Shewana3_0841 at 974.577 kb on + strand, within Shewana3_0841 at 974.594 kb on + strand, within Shewana3_0841 at 974.618 kb on + strand, within Shewana3_0841
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 971,971 - Shewana3_0839 0.45 +0.0 972,070 + Shewana3_0839 0.53 -0.3 972,070 + Shewana3_0839 0.53 -0.2 972,078 - Shewana3_0839 0.54 -0.2 972,078 - Shewana3_0839 0.54 -1.4 972,295 + Shewana3_0839 0.72 +0.1 972,318 + Shewana3_0839 0.74 -0.8 972,500 + Shewana3_0839 0.89 +0.3 972,699 + +0.1 972,699 + -0.7 972,707 - -0.7 972,707 - +0.3 972,854 + -2.8 972,862 - -0.6 972,998 - Shewana3_0840 0.16 +0.5 973,014 + Shewana3_0840 0.18 -0.0 973,015 + Shewana3_0840 0.18 +0.1 973,258 + Shewana3_0840 0.47 +0.6 973,263 + Shewana3_0840 0.48 +0.7 973,263 + Shewana3_0840 0.48 +0.5 973,388 + Shewana3_0840 0.62 -0.0 973,435 + Shewana3_0840 0.68 +0.4 973,443 - Shewana3_0840 0.69 +0.0 973,499 - Shewana3_0840 0.76 +0.7 973,499 - Shewana3_0840 0.76 +0.2 973,499 - Shewana3_0840 0.76 +0.8 973,832 - +0.0 973,855 + -0.3 973,938 + Shewana3_0841 0.15 +0.4 973,990 - Shewana3_0841 0.19 +0.6 974,055 + Shewana3_0841 0.23 +0.4 974,098 - Shewana3_0841 0.26 +0.4 974,250 - Shewana3_0841 0.35 -0.3 974,406 - Shewana3_0841 0.46 -0.5 974,424 + Shewana3_0841 0.47 +1.5 974,439 - Shewana3_0841 0.48 -0.8 974,503 - Shewana3_0841 0.52 -0.6 974,556 - Shewana3_0841 0.55 -0.1 974,556 - Shewana3_0841 0.55 +0.0 974,556 - Shewana3_0841 0.55 -0.0 974,556 - Shewana3_0841 0.55 +0.4 974,577 + Shewana3_0841 0.57 -0.8 974,594 + Shewana3_0841 0.58 +0.4 974,618 + Shewana3_0841 0.59 -0.2
Or see this region's nucleotide sequence