Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0821 and Shewana3_0822 are separated by 25 nucleotides Shewana3_0822 and Shewana3_0823 are separated by 231 nucleotides Shewana3_0823 and Shewana3_0824 are separated by 53 nucleotides
Shewana3_0821: Shewana3_0821 - phosphate transporter (RefSeq), at 951,807 to 953,096
_0821
Shewana3_0822: Shewana3_0822 - hypothetical protein (RefSeq), at 953,122 to 953,802
_0822
Shewana3_0823: Shewana3_0823 - adenylate cyclase (RefSeq), at 954,034 to 955,545
_0823
Shewana3_0824: Shewana3_0824 - Ion transport 2 domain-containing protein (RefSeq), at 955,599 to 956,423
_0824
Position (kb) 954
955
956 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 953.191 kb on - strand, within Shewana3_0822 at 953.358 kb on - strand, within Shewana3_0822 at 953.857 kb on - strand at 954.170 kb on + strand at 954.197 kb on + strand, within Shewana3_0823 at 954.205 kb on - strand, within Shewana3_0823 at 954.205 kb on - strand, within Shewana3_0823 at 954.244 kb on - strand, within Shewana3_0823 at 954.379 kb on + strand, within Shewana3_0823 at 954.431 kb on - strand, within Shewana3_0823 at 954.433 kb on + strand, within Shewana3_0823 at 954.492 kb on + strand, within Shewana3_0823 at 954.603 kb on - strand, within Shewana3_0823 at 954.608 kb on - strand, within Shewana3_0823 at 954.653 kb on + strand, within Shewana3_0823 at 954.653 kb on + strand, within Shewana3_0823 at 954.661 kb on - strand, within Shewana3_0823 at 954.701 kb on + strand, within Shewana3_0823 at 954.739 kb on + strand, within Shewana3_0823 at 955.021 kb on + strand, within Shewana3_0823 at 955.094 kb on + strand, within Shewana3_0823 at 955.157 kb on + strand, within Shewana3_0823 at 955.222 kb on - strand, within Shewana3_0823 at 955.254 kb on + strand, within Shewana3_0823 at 955.296 kb on - strand, within Shewana3_0823 at 955.329 kb on - strand, within Shewana3_0823 at 955.432 kb on + strand at 955.463 kb on + strand at 955.463 kb on + strand at 955.471 kb on - strand at 955.477 kb on + strand at 955.746 kb on + strand, within Shewana3_0824 at 956.009 kb on - strand, within Shewana3_0824 at 956.024 kb on + strand, within Shewana3_0824 at 956.134 kb on - strand, within Shewana3_0824 at 956.306 kb on + strand, within Shewana3_0824 at 956.306 kb on + strand, within Shewana3_0824 at 956.402 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 953,191 - Shewana3_0822 0.10 +1.0 953,358 - Shewana3_0822 0.35 +0.8 953,857 - -0.1 954,170 + -1.4 954,197 + Shewana3_0823 0.11 -0.7 954,205 - Shewana3_0823 0.11 -1.7 954,205 - Shewana3_0823 0.11 -0.5 954,244 - Shewana3_0823 0.14 -1.1 954,379 + Shewana3_0823 0.23 -0.8 954,431 - Shewana3_0823 0.26 -0.1 954,433 + Shewana3_0823 0.26 -0.6 954,492 + Shewana3_0823 0.30 -1.5 954,603 - Shewana3_0823 0.38 -1.6 954,608 - Shewana3_0823 0.38 -2.2 954,653 + Shewana3_0823 0.41 -1.1 954,653 + Shewana3_0823 0.41 -0.6 954,661 - Shewana3_0823 0.41 -1.8 954,701 + Shewana3_0823 0.44 -3.0 954,739 + Shewana3_0823 0.47 +0.1 955,021 + Shewana3_0823 0.65 -0.3 955,094 + Shewana3_0823 0.70 -1.3 955,157 + Shewana3_0823 0.74 +0.6 955,222 - Shewana3_0823 0.79 -1.3 955,254 + Shewana3_0823 0.81 -0.2 955,296 - Shewana3_0823 0.83 -0.5 955,329 - Shewana3_0823 0.86 +1.1 955,432 + -0.2 955,463 + +0.2 955,463 + +0.7 955,471 - -1.2 955,477 + +1.6 955,746 + Shewana3_0824 0.18 -1.1 956,009 - Shewana3_0824 0.50 +0.4 956,024 + Shewana3_0824 0.52 -0.7 956,134 - Shewana3_0824 0.65 -2.3 956,306 + Shewana3_0824 0.86 +1.3 956,306 + Shewana3_0824 0.86 -0.2 956,402 + +0.8
Or see this region's nucleotide sequence