Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0803 and Shewana3_0804 are separated by 145 nucleotides Shewana3_0804 and Shewana3_0805 are separated by 24 nucleotides Shewana3_0805 and Shewana3_0806 are separated by 57 nucleotides
Shewana3_0803: Shewana3_0803 - MORN repeat-containing protein (RefSeq), at 926,008 to 928,281
_0803
Shewana3_0804: Shewana3_0804 - cupin 2 domain-containing protein (RefSeq), at 928,427 to 928,750
_0804
Shewana3_0805: Shewana3_0805 - hypothetical protein (RefSeq), at 928,775 to 929,947
_0805
Shewana3_0806: Shewana3_0806 - peptidase M19, renal dipeptidase (RefSeq), at 930,005 to 931,168
_0806
Position (kb) 928
929
930 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 927.814 kb on + strand, within Shewana3_0803 at 927.822 kb on - strand, within Shewana3_0803 at 927.831 kb on - strand, within Shewana3_0803 at 927.903 kb on - strand, within Shewana3_0803 at 927.903 kb on - strand, within Shewana3_0803 at 928.019 kb on + strand, within Shewana3_0803 at 928.019 kb on + strand, within Shewana3_0803 at 928.027 kb on - strand, within Shewana3_0803 at 928.027 kb on - strand, within Shewana3_0803 at 928.095 kb on - strand at 928.177 kb on - strand at 928.198 kb on + strand at 928.208 kb on + strand at 928.504 kb on + strand, within Shewana3_0804 at 928.512 kb on - strand, within Shewana3_0804 at 928.646 kb on - strand, within Shewana3_0804 at 928.646 kb on - strand, within Shewana3_0804 at 928.670 kb on - strand, within Shewana3_0804 at 928.694 kb on - strand, within Shewana3_0804 at 928.716 kb on - strand, within Shewana3_0804 at 928.920 kb on + strand, within Shewana3_0805 at 929.029 kb on + strand, within Shewana3_0805 at 929.066 kb on + strand, within Shewana3_0805 at 929.386 kb on + strand, within Shewana3_0805 at 929.386 kb on + strand, within Shewana3_0805 at 929.891 kb on + strand at 929.891 kb on + strand at 929.891 kb on + strand at 929.899 kb on - strand at 929.950 kb on - strand at 930.070 kb on + strand at 930.078 kb on - strand at 930.080 kb on + strand at 930.184 kb on + strand, within Shewana3_0806 at 930.444 kb on + strand, within Shewana3_0806 at 930.488 kb on + strand, within Shewana3_0806
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 927,814 + Shewana3_0803 0.79 -0.0 927,822 - Shewana3_0803 0.80 -0.1 927,831 - Shewana3_0803 0.80 -2.4 927,903 - Shewana3_0803 0.83 +0.9 927,903 - Shewana3_0803 0.83 -0.2 928,019 + Shewana3_0803 0.88 -0.1 928,019 + Shewana3_0803 0.88 +0.2 928,027 - Shewana3_0803 0.89 +0.2 928,027 - Shewana3_0803 0.89 -1.4 928,095 - -0.6 928,177 - -1.7 928,198 + -1.8 928,208 + +0.8 928,504 + Shewana3_0804 0.24 +0.1 928,512 - Shewana3_0804 0.26 +0.3 928,646 - Shewana3_0804 0.68 +1.9 928,646 - Shewana3_0804 0.68 -0.5 928,670 - Shewana3_0804 0.75 -0.4 928,694 - Shewana3_0804 0.82 -1.3 928,716 - Shewana3_0804 0.89 -0.9 928,920 + Shewana3_0805 0.12 -0.2 929,029 + Shewana3_0805 0.22 +0.4 929,066 + Shewana3_0805 0.25 +0.9 929,386 + Shewana3_0805 0.52 +0.3 929,386 + Shewana3_0805 0.52 +0.3 929,891 + -0.1 929,891 + -0.4 929,891 + +0.7 929,899 - +1.0 929,950 - +1.0 930,070 + -2.9 930,078 - +0.1 930,080 + -1.0 930,184 + Shewana3_0806 0.15 -0.2 930,444 + Shewana3_0806 0.38 -0.1 930,488 + Shewana3_0806 0.41 +1.3
Or see this region's nucleotide sequence