Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0800 and Shewana3_0801 are separated by 142 nucleotides Shewana3_0801 and Shewana3_0802 are separated by 25 nucleotides Shewana3_0802 and Shewana3_0803 are separated by 6 nucleotides
Shewana3_0800: Shewana3_0800 - peptidase U32 (RefSeq), at 922,790 to 924,706
_0800
Shewana3_0801: Shewana3_0801 - hypothetical protein (RefSeq), at 924,849 to 925,223
_0801
Shewana3_0802: Shewana3_0802 - abortive infection protein (RefSeq), at 925,249 to 926,001
_0802
Shewana3_0803: Shewana3_0803 - MORN repeat-containing protein (RefSeq), at 926,008 to 928,281
_0803
Position (kb) 925
926
927 Strain fitness (log2 ratio) -2
-1
0
1
2 at 924.265 kb on + strand, within Shewana3_0800 at 924.273 kb on - strand, within Shewana3_0800 at 924.273 kb on - strand, within Shewana3_0800 at 924.273 kb on - strand, within Shewana3_0800 at 924.527 kb on + strand at 924.591 kb on + strand at 924.591 kb on + strand at 924.591 kb on + strand at 924.943 kb on + strand, within Shewana3_0801 at 925.394 kb on + strand, within Shewana3_0802 at 925.402 kb on - strand, within Shewana3_0802 at 925.402 kb on - strand, within Shewana3_0802 at 925.402 kb on - strand, within Shewana3_0802 at 925.402 kb on - strand, within Shewana3_0802 at 925.404 kb on - strand, within Shewana3_0802 at 925.404 kb on - strand, within Shewana3_0802 at 925.404 kb on - strand, within Shewana3_0802 at 925.515 kb on - strand, within Shewana3_0802 at 925.555 kb on + strand, within Shewana3_0802 at 925.563 kb on - strand, within Shewana3_0802 at 925.638 kb on - strand, within Shewana3_0802 at 925.689 kb on - strand, within Shewana3_0802 at 925.714 kb on - strand, within Shewana3_0802 at 925.850 kb on + strand, within Shewana3_0802 at 925.850 kb on + strand, within Shewana3_0802 at 925.861 kb on + strand, within Shewana3_0802 at 925.906 kb on + strand, within Shewana3_0802 at 925.939 kb on + strand at 925.939 kb on + strand at 925.983 kb on - strand at 926.032 kb on - strand at 926.064 kb on + strand at 926.201 kb on + strand at 926.357 kb on - strand, within Shewana3_0803 at 926.536 kb on + strand, within Shewana3_0803 at 926.611 kb on - strand, within Shewana3_0803 at 926.737 kb on - strand, within Shewana3_0803 at 926.855 kb on + strand, within Shewana3_0803
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 924,265 + Shewana3_0800 0.77 +0.4 924,273 - Shewana3_0800 0.77 -1.1 924,273 - Shewana3_0800 0.77 +1.9 924,273 - Shewana3_0800 0.77 +0.3 924,527 + +0.6 924,591 + +0.3 924,591 + +0.2 924,591 + +0.8 924,943 + Shewana3_0801 0.25 +1.5 925,394 + Shewana3_0802 0.19 -0.3 925,402 - Shewana3_0802 0.20 -0.5 925,402 - Shewana3_0802 0.20 -0.1 925,402 - Shewana3_0802 0.20 -2.0 925,402 - Shewana3_0802 0.20 -1.3 925,404 - Shewana3_0802 0.21 -0.1 925,404 - Shewana3_0802 0.21 -0.4 925,404 - Shewana3_0802 0.21 +0.1 925,515 - Shewana3_0802 0.35 -0.7 925,555 + Shewana3_0802 0.41 -1.0 925,563 - Shewana3_0802 0.42 -0.6 925,638 - Shewana3_0802 0.52 -0.4 925,689 - Shewana3_0802 0.58 -1.2 925,714 - Shewana3_0802 0.62 -0.9 925,850 + Shewana3_0802 0.80 -0.6 925,850 + Shewana3_0802 0.80 -0.9 925,861 + Shewana3_0802 0.81 -2.4 925,906 + Shewana3_0802 0.87 +1.5 925,939 + -0.6 925,939 + +0.0 925,983 - +0.3 926,032 - -1.3 926,064 + -1.1 926,201 + +0.7 926,357 - Shewana3_0803 0.15 -1.0 926,536 + Shewana3_0803 0.23 -1.4 926,611 - Shewana3_0803 0.27 -1.2 926,737 - Shewana3_0803 0.32 -0.9 926,855 + Shewana3_0803 0.37 -0.7
Or see this region's nucleotide sequence