Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0794 and Shewana3_0795 overlap by 4 nucleotides Shewana3_0795 and Shewana3_0796 are separated by 143 nucleotides Shewana3_0796 and Shewana3_0797 are separated by 62 nucleotides
Shewana3_0794: Shewana3_0794 - ABC transporter related (RefSeq), at 914,563 to 915,501
_0794
Shewana3_0795: Shewana3_0795 - ABC-2 type transporter (RefSeq), at 915,498 to 916,268
_0795
Shewana3_0796: Shewana3_0796 - hypothetical protein (RefSeq), at 916,412 to 916,915
_0796
Shewana3_0797: Shewana3_0797 - protease domain-containing protein (RefSeq), at 916,978 to 921,159
_0797
Position (kb) 915
916
917 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 914.561 kb on - strand at 914.711 kb on + strand, within Shewana3_0794 at 914.803 kb on - strand, within Shewana3_0794 at 914.812 kb on + strand, within Shewana3_0794 at 914.813 kb on - strand, within Shewana3_0794 at 915.344 kb on + strand, within Shewana3_0794 at 915.352 kb on - strand, within Shewana3_0794 at 915.352 kb on - strand, within Shewana3_0794 at 915.727 kb on - strand, within Shewana3_0795 at 915.853 kb on - strand, within Shewana3_0795 at 915.910 kb on + strand, within Shewana3_0795 at 915.951 kb on - strand, within Shewana3_0795 at 915.966 kb on - strand, within Shewana3_0795 at 915.966 kb on - strand, within Shewana3_0795 at 916.043 kb on - strand, within Shewana3_0795 at 916.043 kb on - strand, within Shewana3_0795 at 916.099 kb on + strand, within Shewana3_0795 at 916.133 kb on + strand, within Shewana3_0795 at 916.189 kb on + strand, within Shewana3_0795 at 916.222 kb on - strand at 916.222 kb on - strand at 916.222 kb on - strand at 916.222 kb on - strand at 916.222 kb on - strand at 916.247 kb on + strand at 916.249 kb on + strand at 916.249 kb on + strand at 916.249 kb on + strand at 916.249 kb on + strand at 916.249 kb on + strand at 916.257 kb on - strand at 916.257 kb on - strand at 916.257 kb on - strand at 916.257 kb on - strand at 916.409 kb on + strand at 916.414 kb on + strand at 916.414 kb on + strand at 916.524 kb on - strand, within Shewana3_0796 at 916.564 kb on + strand, within Shewana3_0796 at 916.564 kb on + strand, within Shewana3_0796 at 916.564 kb on + strand, within Shewana3_0796 at 916.572 kb on - strand, within Shewana3_0796 at 916.572 kb on - strand, within Shewana3_0796 at 916.572 kb on - strand, within Shewana3_0796 at 916.633 kb on + strand, within Shewana3_0796 at 916.641 kb on - strand, within Shewana3_0796 at 916.641 kb on - strand, within Shewana3_0796 at 916.641 kb on - strand at 916.641 kb on - strand, within Shewana3_0796 at 916.853 kb on + strand, within Shewana3_0796 at 916.885 kb on - strand at 917.022 kb on - strand at 917.028 kb on + strand at 917.058 kb on + strand at 917.064 kb on + strand at 917.066 kb on - strand at 917.095 kb on - strand at 917.102 kb on + strand at 917.199 kb on - strand at 917.234 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 914,561 - -0.6 914,711 + Shewana3_0794 0.16 -0.8 914,803 - Shewana3_0794 0.26 +0.3 914,812 + Shewana3_0794 0.27 -0.2 914,813 - Shewana3_0794 0.27 -0.4 915,344 + Shewana3_0794 0.83 -0.1 915,352 - Shewana3_0794 0.84 +0.9 915,352 - Shewana3_0794 0.84 +0.3 915,727 - Shewana3_0795 0.30 +1.9 915,853 - Shewana3_0795 0.46 +0.2 915,910 + Shewana3_0795 0.53 -1.1 915,951 - Shewana3_0795 0.59 -0.8 915,966 - Shewana3_0795 0.61 -1.4 915,966 - Shewana3_0795 0.61 -1.4 916,043 - Shewana3_0795 0.71 -0.9 916,043 - Shewana3_0795 0.71 -3.3 916,099 + Shewana3_0795 0.78 -0.4 916,133 + Shewana3_0795 0.82 -1.8 916,189 + Shewana3_0795 0.90 +0.2 916,222 - -0.9 916,222 - -0.1 916,222 - +0.3 916,222 - +0.9 916,222 - +1.9 916,247 + -0.6 916,249 + -0.7 916,249 + -0.2 916,249 + +0.0 916,249 + +0.1 916,249 + +0.7 916,257 - -1.5 916,257 - -1.0 916,257 - -0.9 916,257 - -0.9 916,409 + -0.7 916,414 + +0.4 916,414 + -0.5 916,524 - Shewana3_0796 0.22 +1.9 916,564 + Shewana3_0796 0.30 +0.3 916,564 + Shewana3_0796 0.30 +0.6 916,564 + Shewana3_0796 0.30 -0.8 916,572 - Shewana3_0796 0.32 -0.0 916,572 - Shewana3_0796 0.32 -0.9 916,572 - Shewana3_0796 0.32 -0.1 916,633 + Shewana3_0796 0.44 +0.4 916,641 - Shewana3_0796 0.45 -1.3 916,641 - Shewana3_0796 0.45 -0.7 916,641 - +1.9 916,641 - Shewana3_0796 0.45 +0.3 916,853 + Shewana3_0796 0.88 -0.7 916,885 - -0.7 917,022 - -0.8 917,028 + +0.9 917,058 + -0.8 917,064 + -0.9 917,066 - +0.1 917,095 - -0.1 917,102 + -1.0 917,199 - +0.1 917,234 - +0.4
Or see this region's nucleotide sequence