Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0778 and Shewana3_0779 overlap by 4 nucleotides Shewana3_0779 and Shewana3_0780 are separated by 295 nucleotides Shewana3_0780 and Shewana3_0781 overlap by 1 nucleotides Shewana3_0781 and Shewana3_0782 are separated by 162 nucleotides
Shewana3_0778: Shewana3_0778 - ammonium transporter (RefSeq), at 900,554 to 901,954
_0778
Shewana3_0779: Shewana3_0779 - nitrogen regulatory protein P-II (RefSeq), at 901,951 to 902,289
_0779
Shewana3_0780: Shewana3_0780 - 2-dehydropantoate 2-reductase (RefSeq), at 902,585 to 903,568
_0780
Shewana3_0781: Shewana3_0781 - VanZ family protein (RefSeq), at 903,568 to 903,930
_0781
Shewana3_0782: Shewana3_0782 - putative nucleotide-binding protein (RefSeq), at 904,093 to 904,578
_0782
Position (kb) 902
903
904 Strain fitness (log2 ratio) -2
-1
0
1 at 901.613 kb on + strand, within Shewana3_0778 at 901.613 kb on + strand, within Shewana3_0778 at 901.618 kb on + strand, within Shewana3_0778 at 901.618 kb on + strand, within Shewana3_0778 at 901.700 kb on - strand, within Shewana3_0778 at 901.715 kb on - strand, within Shewana3_0778 at 901.798 kb on - strand, within Shewana3_0778 at 902.155 kb on - strand, within Shewana3_0779 at 902.186 kb on - strand, within Shewana3_0779 at 902.712 kb on + strand, within Shewana3_0780 at 902.730 kb on - strand, within Shewana3_0780 at 902.788 kb on + strand, within Shewana3_0780 at 902.912 kb on - strand, within Shewana3_0780 at 902.970 kb on - strand, within Shewana3_0780 at 902.991 kb on + strand, within Shewana3_0780 at 902.993 kb on + strand, within Shewana3_0780 at 903.003 kb on + strand, within Shewana3_0780 at 903.003 kb on + strand, within Shewana3_0780 at 903.011 kb on - strand, within Shewana3_0780 at 903.011 kb on - strand, within Shewana3_0780 at 903.011 kb on - strand, within Shewana3_0780 at 903.079 kb on - strand, within Shewana3_0780 at 903.144 kb on - strand, within Shewana3_0780 at 903.184 kb on - strand, within Shewana3_0780 at 903.537 kb on - strand at 903.620 kb on - strand, within Shewana3_0781 at 903.687 kb on - strand, within Shewana3_0781 at 903.818 kb on - strand, within Shewana3_0781 at 904.074 kb on + strand at 904.486 kb on + strand, within Shewana3_0782 at 904.542 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 901,613 + Shewana3_0778 0.76 -0.3 901,613 + Shewana3_0778 0.76 -0.5 901,618 + Shewana3_0778 0.76 -0.6 901,618 + Shewana3_0778 0.76 +0.7 901,700 - Shewana3_0778 0.82 +0.9 901,715 - Shewana3_0778 0.83 -0.5 901,798 - Shewana3_0778 0.89 +0.5 902,155 - Shewana3_0779 0.60 -0.1 902,186 - Shewana3_0779 0.69 +0.0 902,712 + Shewana3_0780 0.13 -0.3 902,730 - Shewana3_0780 0.15 -0.7 902,788 + Shewana3_0780 0.21 -0.4 902,912 - Shewana3_0780 0.33 -1.3 902,970 - Shewana3_0780 0.39 -1.0 902,991 + Shewana3_0780 0.41 -0.7 902,993 + Shewana3_0780 0.41 -2.0 903,003 + Shewana3_0780 0.42 -1.5 903,003 + Shewana3_0780 0.42 -0.7 903,011 - Shewana3_0780 0.43 -0.6 903,011 - Shewana3_0780 0.43 -1.6 903,011 - Shewana3_0780 0.43 -0.9 903,079 - Shewana3_0780 0.50 -1.8 903,144 - Shewana3_0780 0.57 -1.0 903,184 - Shewana3_0780 0.61 -1.1 903,537 - -1.6 903,620 - Shewana3_0781 0.14 +0.1 903,687 - Shewana3_0781 0.33 +0.4 903,818 - Shewana3_0781 0.69 -0.6 904,074 + +0.6 904,486 + Shewana3_0782 0.81 +1.5 904,542 + +1.0
Or see this region's nucleotide sequence