Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0776

Experiment: Chloramphenicol 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_0775 and Shewana3_0776 are separated by 163 nucleotidesShewana3_0776 and Shewana3_0777 are separated by 174 nucleotides Shewana3_0775: Shewana3_0775 - 2-dehydro-3-deoxyphosphooctonate aldolase (RefSeq), at 896,881 to 897,729 _0775 Shewana3_0776: Shewana3_0776 - hypothetical protein (RefSeq), at 897,893 to 898,765 _0776 Shewana3_0777: Shewana3_0777 - EAL domain-containing protein (RefSeq), at 898,940 to 900,499 _0777 Position (kb) 897 898 899Strain fitness (log2 ratio) -2 -1 0 1at 897.701 kb on + strandat 897.834 kb on + strandat 897.842 kb on - strandat 897.991 kb on - strand, within Shewana3_0776at 898.059 kb on + strand, within Shewana3_0776at 898.185 kb on + strand, within Shewana3_0776at 898.317 kb on + strand, within Shewana3_0776at 898.317 kb on + strand, within Shewana3_0776at 898.338 kb on + strand, within Shewana3_0776at 898.394 kb on - strand, within Shewana3_0776at 898.475 kb on + strand, within Shewana3_0776at 898.476 kb on + strand, within Shewana3_0776at 898.476 kb on + strand, within Shewana3_0776at 898.507 kb on + strand, within Shewana3_0776at 898.552 kb on - strand, within Shewana3_0776at 898.629 kb on - strand, within Shewana3_0776at 898.666 kb on + strand, within Shewana3_0776at 899.147 kb on - strand, within Shewana3_0777at 899.509 kb on - strand, within Shewana3_0777

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
remove
897,701 + +0.9
897,834 + -0.6
897,842 - +0.5
897,991 - Shewana3_0776 0.11 -0.6
898,059 + Shewana3_0776 0.19 -2.2
898,185 + Shewana3_0776 0.33 -1.0
898,317 + Shewana3_0776 0.49 +0.1
898,317 + Shewana3_0776 0.49 -0.0
898,338 + Shewana3_0776 0.51 -0.8
898,394 - Shewana3_0776 0.57 -0.7
898,475 + Shewana3_0776 0.67 -0.8
898,476 + Shewana3_0776 0.67 -0.9
898,476 + Shewana3_0776 0.67 -0.7
898,507 + Shewana3_0776 0.70 +0.1
898,552 - Shewana3_0776 0.75 -0.8
898,629 - Shewana3_0776 0.84 -1.2
898,666 + Shewana3_0776 0.89 -1.8
899,147 - Shewana3_0777 0.13 -0.5
899,509 - Shewana3_0777 0.36 -0.0

Or see this region's nucleotide sequence