Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0737 and Shewana3_0738 are separated by 120 nucleotides Shewana3_0738 and Shewana3_0739 are separated by 299 nucleotides Shewana3_0739 and Shewana3_R0028 are separated by 152 nucleotides Shewana3_R0028 and Shewana3_0740 are separated by 141 nucleotides Shewana3_0740 and modC are separated by 241 nucleotides
Shewana3_0737: Shewana3_0737 - hypothetical protein (RefSeq), at 856,972 to 857,583
_0737
Shewana3_0738: Shewana3_0738 - hypothetical protein (RefSeq), at 857,704 to 857,835
_0738
Shewana3_0739: Shewana3_0739 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 858,135 to 859,724
_0739
Shewana3_R0028: Shewana3_R0028 - tRNA-Leu (RefSeq), at 859,877 to 859,963
_R0028
Shewana3_0740: Shewana3_0740 - hypothetical protein (RefSeq), at 860,105 to 860,437
_0740
Shewana3_0741: modC - molybdate transporter ATP-binding protein (RefSeq), at 860,679 to 861,764
modC
Position (kb)
858
859
860 Strain fitness (log2 ratio)
-2
-1
0
1 at 857.141 kb on + strand, within Shewana3_0737 at 857.184 kb on + strand, within Shewana3_0737 at 857.557 kb on + strand at 857.564 kb on + strand at 857.565 kb on - strand at 857.572 kb on - strand at 857.820 kb on - strand, within Shewana3_0738 at 857.864 kb on + strand at 858.043 kb on - strand at 858.043 kb on - strand at 858.158 kb on - strand at 858.211 kb on - strand at 858.333 kb on + strand, within Shewana3_0739 at 858.387 kb on + strand, within Shewana3_0739 at 858.447 kb on + strand, within Shewana3_0739 at 858.601 kb on + strand, within Shewana3_0739 at 858.847 kb on - strand, within Shewana3_0739 at 858.919 kb on + strand, within Shewana3_0739 at 858.919 kb on + strand, within Shewana3_0739 at 858.950 kb on + strand, within Shewana3_0739 at 858.950 kb on + strand, within Shewana3_0739 at 858.982 kb on + strand, within Shewana3_0739 at 858.990 kb on - strand, within Shewana3_0739 at 859.225 kb on + strand, within Shewana3_0739 at 859.225 kb on + strand, within Shewana3_0739 at 859.233 kb on - strand, within Shewana3_0739 at 859.233 kb on - strand, within Shewana3_0739 at 859.233 kb on - strand, within Shewana3_0739 at 859.233 kb on - strand, within Shewana3_0739 at 859.233 kb on - strand, within Shewana3_0739 at 859.233 kb on - strand, within Shewana3_0739 at 859.233 kb on - strand, within Shewana3_0739 at 859.469 kb on - strand, within Shewana3_0739 at 859.470 kb on - strand, within Shewana3_0739 at 859.617 kb on + strand at 859.705 kb on - strand at 860.039 kb on + strand at 860.188 kb on + strand, within Shewana3_0740 at 860.302 kb on - strand, within Shewana3_0740 at 860.327 kb on + strand, within Shewana3_0740 at 860.335 kb on - strand, within Shewana3_0740 at 860.336 kb on - strand, within Shewana3_0740 at 860.433 kb on + strand at 860.479 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 857,141 + Shewana3_0737 0.28 -0.0 857,184 + Shewana3_0737 0.35 +0.3 857,557 + +0.3 857,564 + +0.4 857,565 - -0.8 857,572 - -0.7 857,820 - Shewana3_0738 0.88 +0.1 857,864 + -2.1 858,043 - +0.4 858,043 - -0.1 858,158 - -2.2 858,211 - -0.3 858,333 + Shewana3_0739 0.12 -0.2 858,387 + Shewana3_0739 0.16 -1.6 858,447 + Shewana3_0739 0.20 +0.3 858,601 + Shewana3_0739 0.29 -0.5 858,847 - Shewana3_0739 0.45 -0.1 858,919 + Shewana3_0739 0.49 -0.4 858,919 + Shewana3_0739 0.49 -0.4 858,950 + Shewana3_0739 0.51 -0.4 858,950 + Shewana3_0739 0.51 -0.6 858,982 + Shewana3_0739 0.53 +0.3 858,990 - Shewana3_0739 0.54 +0.3 859,225 + Shewana3_0739 0.69 +0.1 859,225 + Shewana3_0739 0.69 +0.4 859,233 - Shewana3_0739 0.69 +0.1 859,233 - Shewana3_0739 0.69 -0.6 859,233 - Shewana3_0739 0.69 -0.0 859,233 - Shewana3_0739 0.69 -1.8 859,233 - Shewana3_0739 0.69 -0.5 859,233 - Shewana3_0739 0.69 -0.4 859,233 - Shewana3_0739 0.69 -0.5 859,469 - Shewana3_0739 0.84 -1.2 859,470 - Shewana3_0739 0.84 -0.8 859,617 + -0.6 859,705 - -0.4 860,039 + -2.5 860,188 + Shewana3_0740 0.25 +0.1 860,302 - Shewana3_0740 0.59 +0.1 860,327 + Shewana3_0740 0.67 -1.1 860,335 - Shewana3_0740 0.69 +0.1 860,336 - Shewana3_0740 0.69 +0.0 860,433 + -0.7 860,479 - -1.1
Or see this region's nucleotide sequence