Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0697 and Shewana3_0698 are separated by 0 nucleotides Shewana3_0698 and Shewana3_0699 are separated by 69 nucleotides Shewana3_0699 and Shewana3_0700 are separated by 181 nucleotides
Shewana3_0697: Shewana3_0697 - RNAse R (RefSeq), at 812,472 to 814,901
_0697
Shewana3_0698: Shewana3_0698 - 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq), at 814,902 to 815,642
_0698
Shewana3_0699: Shewana3_0699 - major facilitator transporter (RefSeq), at 815,712 to 817,136
_0699
Shewana3_0700: Shewana3_0700 - hypothetical protein (RefSeq), at 817,318 to 818,073
_0700
Position (kb) 815
816
817
818 Strain fitness (log2 ratio) -2
-1
0
1 at 814.814 kb on + strand at 814.960 kb on + strand at 814.989 kb on + strand, within Shewana3_0698 at 815.034 kb on + strand, within Shewana3_0698 at 815.041 kb on - strand, within Shewana3_0698 at 815.076 kb on + strand, within Shewana3_0698 at 815.098 kb on + strand, within Shewana3_0698 at 815.508 kb on + strand, within Shewana3_0698 at 815.508 kb on + strand, within Shewana3_0698 at 815.744 kb on + strand at 815.982 kb on - strand, within Shewana3_0699 at 816.075 kb on - strand, within Shewana3_0699 at 816.109 kb on - strand, within Shewana3_0699 at 816.110 kb on - strand, within Shewana3_0699 at 816.527 kb on + strand, within Shewana3_0699 at 816.617 kb on + strand, within Shewana3_0699 at 816.654 kb on + strand, within Shewana3_0699 at 816.667 kb on - strand, within Shewana3_0699 at 816.685 kb on - strand, within Shewana3_0699 at 816.958 kb on + strand, within Shewana3_0699 at 817.154 kb on + strand at 817.162 kb on - strand at 817.172 kb on - strand at 817.210 kb on - strand at 817.338 kb on + strand at 817.338 kb on + strand at 817.346 kb on - strand at 817.346 kb on - strand at 817.346 kb on - strand at 817.373 kb on - strand at 817.649 kb on + strand, within Shewana3_0700 at 817.763 kb on + strand, within Shewana3_0700 at 817.765 kb on - strand, within Shewana3_0700 at 817.771 kb on - strand, within Shewana3_0700 at 817.773 kb on - strand, within Shewana3_0700 at 817.814 kb on - strand, within Shewana3_0700 at 817.824 kb on - strand, within Shewana3_0700 at 817.902 kb on + strand, within Shewana3_0700 at 817.933 kb on + strand, within Shewana3_0700
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 814,814 + -0.6 814,960 + -0.6 814,989 + Shewana3_0698 0.12 +1.1 815,034 + Shewana3_0698 0.18 +0.6 815,041 - Shewana3_0698 0.19 -2.2 815,076 + Shewana3_0698 0.23 +0.8 815,098 + Shewana3_0698 0.26 +0.4 815,508 + Shewana3_0698 0.82 +1.0 815,508 + Shewana3_0698 0.82 +0.8 815,744 + -0.6 815,982 - Shewana3_0699 0.19 +1.3 816,075 - Shewana3_0699 0.25 -0.3 816,109 - Shewana3_0699 0.28 -0.3 816,110 - Shewana3_0699 0.28 +0.3 816,527 + Shewana3_0699 0.57 -0.3 816,617 + Shewana3_0699 0.64 -0.9 816,654 + Shewana3_0699 0.66 -0.1 816,667 - Shewana3_0699 0.67 -0.9 816,685 - Shewana3_0699 0.68 +0.6 816,958 + Shewana3_0699 0.87 -1.1 817,154 + -0.5 817,162 - -0.1 817,172 - +0.0 817,210 - -0.8 817,338 + -0.0 817,338 + -1.1 817,346 - +0.4 817,346 - +0.1 817,346 - +0.5 817,373 - -0.1 817,649 + Shewana3_0700 0.44 -1.4 817,763 + Shewana3_0700 0.59 -0.4 817,765 - Shewana3_0700 0.59 +0.3 817,771 - Shewana3_0700 0.60 -0.4 817,773 - Shewana3_0700 0.60 +0.6 817,814 - Shewana3_0700 0.66 +0.3 817,824 - Shewana3_0700 0.67 -0.7 817,902 + Shewana3_0700 0.77 -0.2 817,933 + Shewana3_0700 0.81 +1.2
Or see this region's nucleotide sequence