Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0698

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0697 and Shewana3_0698 are separated by 0 nucleotidesShewana3_0698 and Shewana3_0699 are separated by 69 nucleotides Shewana3_0697: Shewana3_0697 - RNAse R (RefSeq), at 812,472 to 814,901 _0697 Shewana3_0698: Shewana3_0698 - 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq), at 814,902 to 815,642 _0698 Shewana3_0699: Shewana3_0699 - major facilitator transporter (RefSeq), at 815,712 to 817,136 _0699 Position (kb) 814 815 816Strain fitness (log2 ratio) -2 -1 0 1at 813.947 kb on - strand, within Shewana3_0697at 814.539 kb on + strand, within Shewana3_0697at 814.560 kb on + strand, within Shewana3_0697at 814.678 kb on - strandat 814.814 kb on + strandat 814.960 kb on + strandat 814.989 kb on + strand, within Shewana3_0698at 815.034 kb on + strand, within Shewana3_0698at 815.041 kb on - strand, within Shewana3_0698at 815.076 kb on + strand, within Shewana3_0698at 815.098 kb on + strand, within Shewana3_0698at 815.508 kb on + strand, within Shewana3_0698at 815.508 kb on + strand, within Shewana3_0698at 815.744 kb on + strandat 815.982 kb on - strand, within Shewana3_0699at 816.075 kb on - strand, within Shewana3_0699at 816.109 kb on - strand, within Shewana3_0699at 816.110 kb on - strand, within Shewana3_0699at 816.527 kb on + strand, within Shewana3_0699at 816.617 kb on + strand, within Shewana3_0699

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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813,947 - Shewana3_0697 0.61 -0.5
814,539 + Shewana3_0697 0.85 +0.6
814,560 + Shewana3_0697 0.86 -0.3
814,678 - -0.8
814,814 + -0.6
814,960 + -0.6
814,989 + Shewana3_0698 0.12 +1.1
815,034 + Shewana3_0698 0.18 +0.6
815,041 - Shewana3_0698 0.19 -2.2
815,076 + Shewana3_0698 0.23 +0.8
815,098 + Shewana3_0698 0.26 +0.4
815,508 + Shewana3_0698 0.82 +1.0
815,508 + Shewana3_0698 0.82 +0.8
815,744 + -0.6
815,982 - Shewana3_0699 0.19 +1.3
816,075 - Shewana3_0699 0.25 -0.3
816,109 - Shewana3_0699 0.28 -0.3
816,110 - Shewana3_0699 0.28 +0.3
816,527 + Shewana3_0699 0.57 -0.3
816,617 + Shewana3_0699 0.64 -0.9

Or see this region's nucleotide sequence