Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0695 and Shewana3_0696 are separated by 108 nucleotides Shewana3_0696 and Shewana3_0697 are separated by 39 nucleotides Shewana3_0697 and Shewana3_0698 are separated by 0 nucleotides Shewana3_0698 and Shewana3_0699 are separated by 69 nucleotides
Shewana3_0695: Shewana3_0695 - adenylosuccinate synthetase (RefSeq), at 810,372 to 811,667
_0695
Shewana3_0696: Shewana3_0696 - Sel1 domain-containing protein (RefSeq), at 811,776 to 812,432
_0696
Shewana3_0697: Shewana3_0697 - RNAse R (RefSeq), at 812,472 to 814,901
_0697
Shewana3_0698: Shewana3_0698 - 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq), at 814,902 to 815,642
_0698
Shewana3_0699: Shewana3_0699 - major facilitator transporter (RefSeq), at 815,712 to 817,136
_0699
Position (kb) 812
813
814
815 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 811.534 kb on + strand, within Shewana3_0695 at 811.628 kb on + strand at 811.958 kb on - strand, within Shewana3_0696 at 812.042 kb on + strand, within Shewana3_0696 at 812.051 kb on - strand, within Shewana3_0696 at 812.078 kb on - strand, within Shewana3_0696 at 812.262 kb on + strand, within Shewana3_0696 at 812.507 kb on - strand at 812.644 kb on + strand at 813.153 kb on - strand, within Shewana3_0697 at 813.377 kb on + strand, within Shewana3_0697 at 813.578 kb on + strand, within Shewana3_0697 at 813.620 kb on + strand, within Shewana3_0697 at 813.799 kb on - strand, within Shewana3_0697 at 813.947 kb on - strand, within Shewana3_0697 at 814.539 kb on + strand, within Shewana3_0697 at 814.560 kb on + strand, within Shewana3_0697 at 814.678 kb on - strand at 814.814 kb on + strand at 814.960 kb on + strand at 814.989 kb on + strand, within Shewana3_0698 at 815.034 kb on + strand, within Shewana3_0698 at 815.041 kb on - strand, within Shewana3_0698 at 815.076 kb on + strand, within Shewana3_0698 at 815.098 kb on + strand, within Shewana3_0698 at 815.508 kb on + strand, within Shewana3_0698 at 815.508 kb on + strand, within Shewana3_0698 at 815.744 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 811,534 + Shewana3_0695 0.90 +1.1 811,628 + +0.8 811,958 - Shewana3_0696 0.28 -0.5 812,042 + Shewana3_0696 0.40 +0.6 812,051 - Shewana3_0696 0.42 -0.8 812,078 - Shewana3_0696 0.46 -2.1 812,262 + Shewana3_0696 0.74 +1.1 812,507 - -3.0 812,644 + -0.3 813,153 - Shewana3_0697 0.28 -1.8 813,377 + Shewana3_0697 0.37 -1.6 813,578 + Shewana3_0697 0.46 -1.6 813,620 + Shewana3_0697 0.47 +1.1 813,799 - Shewana3_0697 0.55 -2.9 813,947 - Shewana3_0697 0.61 -0.5 814,539 + Shewana3_0697 0.85 +0.6 814,560 + Shewana3_0697 0.86 -0.3 814,678 - -0.8 814,814 + -0.6 814,960 + -0.6 814,989 + Shewana3_0698 0.12 +1.1 815,034 + Shewana3_0698 0.18 +0.6 815,041 - Shewana3_0698 0.19 -2.2 815,076 + Shewana3_0698 0.23 +0.8 815,098 + Shewana3_0698 0.26 +0.4 815,508 + Shewana3_0698 0.82 +1.0 815,508 + Shewana3_0698 0.82 +0.8 815,744 + -0.6
Or see this region's nucleotide sequence