Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nrfA and Shewana3_0659 are separated by 175 nucleotides Shewana3_0659 and Shewana3_0660 are separated by 205 nucleotides
Shewana3_0658: nrfA - cytochrome c552 (RefSeq), at 778,296 to 779,717
nrfA
Shewana3_0659: Shewana3_0659 - diguanylate cyclase/phosphodiesterase with GAF sensor (RefSeq), at 779,893 to 781,833
_0659
Shewana3_0660: Shewana3_0660 - hypothetical protein (RefSeq), at 782,039 to 782,809
_0660
Position (kb) 779
780
781
782 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 779.042 kb on + strand, within nrfA at 779.042 kb on + strand, within nrfA at 779.050 kb on - strand, within nrfA at 779.050 kb on - strand, within nrfA at 779.072 kb on - strand, within nrfA at 779.333 kb on + strand, within nrfA at 779.391 kb on - strand, within nrfA at 779.496 kb on - strand, within nrfA at 779.534 kb on + strand, within nrfA at 779.612 kb on + strand at 779.633 kb on - strand at 779.885 kb on - strand at 779.898 kb on + strand at 779.929 kb on - strand at 780.162 kb on - strand, within Shewana3_0659 at 780.166 kb on + strand, within Shewana3_0659 at 780.166 kb on + strand, within Shewana3_0659 at 780.174 kb on - strand, within Shewana3_0659 at 780.174 kb on - strand, within Shewana3_0659 at 780.330 kb on - strand, within Shewana3_0659 at 780.419 kb on - strand, within Shewana3_0659 at 780.443 kb on - strand, within Shewana3_0659 at 780.523 kb on - strand, within Shewana3_0659 at 780.558 kb on + strand, within Shewana3_0659 at 780.723 kb on - strand, within Shewana3_0659 at 780.743 kb on + strand, within Shewana3_0659 at 780.795 kb on + strand, within Shewana3_0659 at 780.795 kb on + strand, within Shewana3_0659 at 780.890 kb on + strand, within Shewana3_0659 at 780.913 kb on + strand, within Shewana3_0659 at 781.134 kb on - strand, within Shewana3_0659 at 781.203 kb on + strand, within Shewana3_0659 at 781.259 kb on - strand, within Shewana3_0659 at 781.398 kb on + strand, within Shewana3_0659 at 781.406 kb on - strand, within Shewana3_0659 at 781.524 kb on - strand, within Shewana3_0659 at 781.539 kb on + strand, within Shewana3_0659 at 781.578 kb on - strand, within Shewana3_0659 at 781.705 kb on + strand at 781.718 kb on - strand at 781.870 kb on + strand at 781.884 kb on - strand at 782.053 kb on - strand at 782.132 kb on + strand, within Shewana3_0660 at 782.187 kb on + strand, within Shewana3_0660 at 782.202 kb on - strand, within Shewana3_0660 at 782.284 kb on - strand, within Shewana3_0660 at 782.294 kb on + strand, within Shewana3_0660 at 782.294 kb on + strand, within Shewana3_0660 at 782.294 kb on + strand, within Shewana3_0660 at 782.368 kb on - strand, within Shewana3_0660 at 782.368 kb on - strand, within Shewana3_0660 at 782.368 kb on - strand, within Shewana3_0660 at 782.369 kb on + strand, within Shewana3_0660 at 782.397 kb on + strand, within Shewana3_0660 at 782.582 kb on + strand, within Shewana3_0660 at 782.623 kb on + strand, within Shewana3_0660 at 782.633 kb on + strand, within Shewana3_0660 at 782.752 kb on + strand at 782.784 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 779,042 + nrfA Shewana3_0658 0.52 -0.3 779,042 + nrfA Shewana3_0658 0.52 +0.4 779,050 - nrfA Shewana3_0658 0.53 -1.6 779,050 - nrfA Shewana3_0658 0.53 -0.9 779,072 - nrfA Shewana3_0658 0.55 +0.0 779,333 + nrfA Shewana3_0658 0.73 +0.7 779,391 - nrfA Shewana3_0658 0.77 -1.3 779,496 - nrfA Shewana3_0658 0.84 -3.1 779,534 + nrfA Shewana3_0658 0.87 +0.5 779,612 + +0.9 779,633 - -2.1 779,885 - +0.7 779,898 + +0.1 779,929 - -0.1 780,162 - Shewana3_0659 0.14 +1.2 780,166 + Shewana3_0659 0.14 -0.4 780,166 + Shewana3_0659 0.14 +0.2 780,174 - Shewana3_0659 0.14 -0.1 780,174 - Shewana3_0659 0.14 +0.0 780,330 - Shewana3_0659 0.23 -1.0 780,419 - Shewana3_0659 0.27 -0.6 780,443 - Shewana3_0659 0.28 +0.4 780,523 - Shewana3_0659 0.32 -1.2 780,558 + Shewana3_0659 0.34 +0.1 780,723 - Shewana3_0659 0.43 -1.1 780,743 + Shewana3_0659 0.44 -0.2 780,795 + Shewana3_0659 0.46 -0.8 780,795 + Shewana3_0659 0.46 -1.0 780,890 + Shewana3_0659 0.51 +0.0 780,913 + Shewana3_0659 0.53 -0.1 781,134 - Shewana3_0659 0.64 -1.5 781,203 + Shewana3_0659 0.67 -0.8 781,259 - Shewana3_0659 0.70 -1.1 781,398 + Shewana3_0659 0.78 -1.2 781,406 - Shewana3_0659 0.78 +1.3 781,524 - Shewana3_0659 0.84 -1.0 781,539 + Shewana3_0659 0.85 +0.3 781,578 - Shewana3_0659 0.87 -1.1 781,705 + -0.4 781,718 - -0.4 781,870 + -0.1 781,884 - -0.8 782,053 - +0.1 782,132 + Shewana3_0660 0.12 +0.2 782,187 + Shewana3_0660 0.19 +0.0 782,202 - Shewana3_0660 0.21 +0.0 782,284 - Shewana3_0660 0.32 -0.9 782,294 + Shewana3_0660 0.33 -2.1 782,294 + Shewana3_0660 0.33 +0.2 782,294 + Shewana3_0660 0.33 -0.0 782,368 - Shewana3_0660 0.43 -0.1 782,368 - Shewana3_0660 0.43 -0.3 782,368 - Shewana3_0660 0.43 -1.4 782,369 + Shewana3_0660 0.43 -0.1 782,397 + Shewana3_0660 0.46 +0.3 782,582 + Shewana3_0660 0.70 +0.8 782,623 + Shewana3_0660 0.76 +0.7 782,633 + Shewana3_0660 0.77 +0.2 782,752 + +0.1 782,784 + +0.4
Or see this region's nucleotide sequence