Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0652 and Shewana3_0653 are separated by 1 nucleotides Shewana3_0653 and Shewana3_0654 are separated by 54 nucleotides
Shewana3_0652: Shewana3_0652 - aspartate kinase III (RefSeq), at 771,517 to 772,872
_0652
Shewana3_0653: Shewana3_0653 - succinylglutamate desuccinylase/aspartoacylase (RefSeq), at 772,874 to 773,989
_0653
Shewana3_0654: Shewana3_0654 - Mg2 transporter protein, CorA family protein (RefSeq), at 774,044 to 775,021
_0654
Position (kb) 772
773
774 Strain fitness (log2 ratio) -2
-1
0
1 at 771.876 kb on + strand, within Shewana3_0652 at 771.949 kb on + strand, within Shewana3_0652 at 772.180 kb on + strand, within Shewana3_0652 at 772.400 kb on - strand, within Shewana3_0652 at 772.436 kb on + strand, within Shewana3_0652 at 772.670 kb on + strand, within Shewana3_0652 at 772.732 kb on + strand, within Shewana3_0652 at 772.749 kb on - strand at 772.865 kb on - strand at 772.925 kb on + strand at 772.982 kb on - strand at 773.112 kb on + strand, within Shewana3_0653 at 773.262 kb on - strand, within Shewana3_0653 at 773.354 kb on + strand, within Shewana3_0653 at 773.355 kb on - strand, within Shewana3_0653 at 773.429 kb on + strand, within Shewana3_0653 at 773.526 kb on - strand, within Shewana3_0653 at 773.595 kb on + strand, within Shewana3_0653 at 773.733 kb on + strand, within Shewana3_0653 at 773.784 kb on - strand, within Shewana3_0653 at 773.859 kb on - strand, within Shewana3_0653 at 773.948 kb on - strand at 773.950 kb on + strand at 774.743 kb on - strand, within Shewana3_0654 at 774.758 kb on + strand, within Shewana3_0654 at 774.854 kb on + strand, within Shewana3_0654 at 774.948 kb on - strand at 774.948 kb on - strand at 774.955 kb on - strand at 774.979 kb on + strand at 774.982 kb on - strand at 774.987 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 771,876 + Shewana3_0652 0.26 +0.4 771,949 + Shewana3_0652 0.32 +0.2 772,180 + Shewana3_0652 0.49 +0.2 772,400 - Shewana3_0652 0.65 -0.1 772,436 + Shewana3_0652 0.68 +0.9 772,670 + Shewana3_0652 0.85 +0.7 772,732 + Shewana3_0652 0.90 +0.8 772,749 - -2.6 772,865 - -0.7 772,925 + +0.5 772,982 - -0.2 773,112 + Shewana3_0653 0.21 +0.9 773,262 - Shewana3_0653 0.35 +0.0 773,354 + Shewana3_0653 0.43 +0.2 773,355 - Shewana3_0653 0.43 +0.7 773,429 + Shewana3_0653 0.50 +0.9 773,526 - Shewana3_0653 0.58 +0.0 773,595 + Shewana3_0653 0.65 +0.8 773,733 + Shewana3_0653 0.77 +0.6 773,784 - Shewana3_0653 0.82 -2.2 773,859 - Shewana3_0653 0.88 -0.1 773,948 - -0.2 773,950 + -0.1 774,743 - Shewana3_0654 0.71 -0.1 774,758 + Shewana3_0654 0.73 -0.2 774,854 + Shewana3_0654 0.83 -0.2 774,948 - +1.0 774,948 - -0.4 774,955 - -0.9 774,979 + -0.4 774,982 - +0.0 774,987 - -1.2
Or see this region's nucleotide sequence