Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0633 and Shewana3_0634 are separated by 62 nucleotides Shewana3_0634 and Shewana3_0635 overlap by 11 nucleotides Shewana3_0635 and Shewana3_0636 are separated by 254 nucleotides
Shewana3_0633: Shewana3_0633 - molydopterin dinucleotide-binding region (RefSeq), at 743,874 to 746,981
_0633
Shewana3_0634: Shewana3_0634 - polysulphide reductase, NrfD (RefSeq), at 747,044 to 748,138
_0634
Shewana3_0635: Shewana3_0635 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 748,128 to 748,883
_0635
Shewana3_0636: Shewana3_0636 - ATPase domain-containing protein (RefSeq), at 749,138 to 751,126
_0636
Position (kb) 747
748
749 Strain fitness (log2 ratio) -2
-1
0
1 at 746.131 kb on + strand, within Shewana3_0633 at 746.139 kb on - strand, within Shewana3_0633 at 746.139 kb on - strand, within Shewana3_0633 at 746.139 kb on - strand, within Shewana3_0633 at 746.139 kb on - strand, within Shewana3_0633 at 746.197 kb on - strand, within Shewana3_0633 at 746.197 kb on - strand, within Shewana3_0633 at 746.282 kb on - strand, within Shewana3_0633 at 746.332 kb on - strand, within Shewana3_0633 at 746.491 kb on - strand, within Shewana3_0633 at 746.717 kb on + strand at 746.801 kb on - strand at 746.898 kb on + strand at 746.904 kb on + strand at 746.945 kb on - strand at 746.998 kb on - strand at 747.125 kb on + strand at 747.330 kb on - strand, within Shewana3_0634 at 747.428 kb on + strand, within Shewana3_0634 at 747.448 kb on + strand, within Shewana3_0634 at 747.456 kb on - strand, within Shewana3_0634 at 747.456 kb on - strand, within Shewana3_0634 at 747.494 kb on + strand, within Shewana3_0634 at 747.815 kb on + strand, within Shewana3_0634 at 747.922 kb on + strand, within Shewana3_0634 at 748.052 kb on + strand at 748.052 kb on + strand at 748.055 kb on - strand at 748.081 kb on - strand at 748.083 kb on + strand at 748.083 kb on + strand at 748.258 kb on + strand, within Shewana3_0635 at 748.485 kb on - strand, within Shewana3_0635 at 748.595 kb on + strand, within Shewana3_0635 at 748.595 kb on + strand, within Shewana3_0635 at 748.603 kb on - strand, within Shewana3_0635 at 748.710 kb on - strand, within Shewana3_0635 at 748.722 kb on - strand, within Shewana3_0635 at 748.797 kb on + strand, within Shewana3_0635 at 748.860 kb on + strand at 748.944 kb on + strand at 748.987 kb on - strand at 749.020 kb on + strand at 749.125 kb on + strand at 749.133 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 746,131 + Shewana3_0633 0.73 -0.0 746,139 - Shewana3_0633 0.73 +0.4 746,139 - Shewana3_0633 0.73 +0.4 746,139 - Shewana3_0633 0.73 +0.3 746,139 - Shewana3_0633 0.73 +0.1 746,197 - Shewana3_0633 0.75 +0.3 746,197 - Shewana3_0633 0.75 +0.3 746,282 - Shewana3_0633 0.77 -0.0 746,332 - Shewana3_0633 0.79 -1.1 746,491 - Shewana3_0633 0.84 -0.2 746,717 + +0.7 746,801 - +0.5 746,898 + +0.4 746,904 + -0.6 746,945 - +0.2 746,998 - -1.5 747,125 + +0.1 747,330 - Shewana3_0634 0.26 +0.9 747,428 + Shewana3_0634 0.35 +0.1 747,448 + Shewana3_0634 0.37 -0.3 747,456 - Shewana3_0634 0.38 -0.1 747,456 - Shewana3_0634 0.38 -0.1 747,494 + Shewana3_0634 0.41 -0.6 747,815 + Shewana3_0634 0.70 -0.4 747,922 + Shewana3_0634 0.80 +0.4 748,052 + -0.4 748,052 + +0.1 748,055 - +0.1 748,081 - -0.1 748,083 + +1.3 748,083 + +0.1 748,258 + Shewana3_0635 0.17 -0.6 748,485 - Shewana3_0635 0.47 +0.3 748,595 + Shewana3_0635 0.62 -0.3 748,595 + Shewana3_0635 0.62 -0.3 748,603 - Shewana3_0635 0.63 -1.0 748,710 - Shewana3_0635 0.77 -0.4 748,722 - Shewana3_0635 0.79 -2.4 748,797 + Shewana3_0635 0.88 -0.5 748,860 + -1.1 748,944 + -0.3 748,987 - +0.6 749,020 + -2.0 749,125 + +1.5 749,133 - +0.1
Or see this region's nucleotide sequence