Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0626 and Shewana3_0627 are separated by 90 nucleotides
Shewana3_0626: Shewana3_0626 - hypothetical protein (RefSeq), at 735,102 to 736,592
_0626
Shewana3_0627: Shewana3_0627 - hypothetical protein (RefSeq), at 736,683 to 737,444
_0627
Position (kb) 735
736
737 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 734.129 kb on - strand at 734.270 kb on - strand at 734.270 kb on - strand at 734.343 kb on - strand at 734.784 kb on - strand at 734.871 kb on - strand at 735.115 kb on + strand at 735.259 kb on + strand, within Shewana3_0626 at 735.376 kb on + strand, within Shewana3_0626 at 735.567 kb on - strand, within Shewana3_0626 at 735.668 kb on + strand, within Shewana3_0626 at 735.678 kb on + strand, within Shewana3_0626 at 735.686 kb on - strand, within Shewana3_0626 at 735.688 kb on + strand, within Shewana3_0626 at 735.688 kb on + strand, within Shewana3_0626 at 735.693 kb on + strand, within Shewana3_0626 at 735.696 kb on - strand, within Shewana3_0626 at 735.920 kb on + strand, within Shewana3_0626 at 735.928 kb on - strand, within Shewana3_0626 at 735.928 kb on - strand, within Shewana3_0626 at 735.984 kb on - strand, within Shewana3_0626 at 736.021 kb on - strand, within Shewana3_0626 at 736.177 kb on + strand, within Shewana3_0626 at 736.242 kb on + strand, within Shewana3_0626 at 736.250 kb on - strand, within Shewana3_0626 at 736.288 kb on - strand, within Shewana3_0626 at 736.348 kb on - strand, within Shewana3_0626 at 736.484 kb on + strand at 736.493 kb on + strand at 736.651 kb on - strand at 736.733 kb on - strand at 736.733 kb on - strand at 737.012 kb on - strand, within Shewana3_0627 at 737.028 kb on + strand, within Shewana3_0627 at 737.028 kb on + strand, within Shewana3_0627 at 737.111 kb on + strand, within Shewana3_0627 at 737.187 kb on - strand, within Shewana3_0627 at 737.252 kb on + strand, within Shewana3_0627 at 737.292 kb on - strand, within Shewana3_0627 at 737.300 kb on - strand, within Shewana3_0627 at 737.378 kb on + strand at 737.548 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 734,129 - -0.7 734,270 - +0.8 734,270 - -0.2 734,343 - +0.3 734,784 - -0.3 734,871 - +0.9 735,115 + +0.3 735,259 + Shewana3_0626 0.11 -0.1 735,376 + Shewana3_0626 0.18 -0.8 735,567 - Shewana3_0626 0.31 -0.7 735,668 + Shewana3_0626 0.38 -0.6 735,678 + Shewana3_0626 0.39 -0.7 735,686 - Shewana3_0626 0.39 -2.9 735,688 + Shewana3_0626 0.39 -1.2 735,688 + Shewana3_0626 0.39 -0.4 735,693 + Shewana3_0626 0.40 -0.6 735,696 - Shewana3_0626 0.40 -1.2 735,920 + Shewana3_0626 0.55 -0.6 735,928 - Shewana3_0626 0.55 +0.3 735,928 - Shewana3_0626 0.55 +0.7 735,984 - Shewana3_0626 0.59 -1.3 736,021 - Shewana3_0626 0.62 -0.9 736,177 + Shewana3_0626 0.72 -1.0 736,242 + Shewana3_0626 0.76 -2.3 736,250 - Shewana3_0626 0.77 +0.1 736,288 - Shewana3_0626 0.80 -0.7 736,348 - Shewana3_0626 0.84 -1.8 736,484 + -0.4 736,493 + +0.9 736,651 - -2.1 736,733 - +0.4 736,733 - -0.1 737,012 - Shewana3_0627 0.43 -0.4 737,028 + Shewana3_0627 0.45 +0.2 737,028 + Shewana3_0627 0.45 -0.6 737,111 + Shewana3_0627 0.56 -0.2 737,187 - Shewana3_0627 0.66 -2.1 737,252 + Shewana3_0627 0.75 +0.4 737,292 - Shewana3_0627 0.80 +0.4 737,300 - Shewana3_0627 0.81 -1.0 737,378 + -0.3 737,548 + +0.1
Or see this region's nucleotide sequence