Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0606 and Shewana3_0607 are separated by 455 nucleotides Shewana3_0607 and Shewana3_0608 are separated by 199 nucleotides
Shewana3_0606: Shewana3_0606 - aminodeoxychorismate synthase, glutamine amidotransferase subunit (RefSeq), at 708,744 to 709,319
_0606
Shewana3_0607: Shewana3_0607 - peptidase S9 prolyl oligopeptidase (RefSeq), at 709,775 to 712,255
_0607
Shewana3_0608: Shewana3_0608 - putative signal transduction protein (RefSeq), at 712,455 to 713,600
_0608
Position (kb) 709
710
711
712
713 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 708.810 kb on + strand, within Shewana3_0606 at 708.900 kb on - strand, within Shewana3_0606 at 709.085 kb on + strand, within Shewana3_0606 at 709.343 kb on + strand at 709.351 kb on - strand at 709.499 kb on + strand at 709.757 kb on + strand at 709.886 kb on + strand at 709.926 kb on + strand at 709.926 kb on + strand at 709.926 kb on + strand at 709.948 kb on + strand at 710.075 kb on - strand, within Shewana3_0607 at 710.135 kb on + strand, within Shewana3_0607 at 710.143 kb on - strand, within Shewana3_0607 at 710.153 kb on - strand, within Shewana3_0607 at 710.300 kb on - strand, within Shewana3_0607 at 710.410 kb on + strand, within Shewana3_0607 at 710.542 kb on + strand, within Shewana3_0607 at 710.769 kb on + strand, within Shewana3_0607 at 710.803 kb on + strand, within Shewana3_0607 at 710.824 kb on + strand, within Shewana3_0607 at 710.832 kb on - strand, within Shewana3_0607 at 711.099 kb on - strand, within Shewana3_0607 at 711.124 kb on + strand, within Shewana3_0607 at 711.233 kb on + strand, within Shewana3_0607 at 711.241 kb on - strand, within Shewana3_0607 at 711.417 kb on + strand, within Shewana3_0607 at 711.458 kb on - strand, within Shewana3_0607 at 711.687 kb on - strand, within Shewana3_0607 at 711.708 kb on - strand, within Shewana3_0607 at 711.719 kb on + strand, within Shewana3_0607 at 711.792 kb on + strand, within Shewana3_0607 at 711.959 kb on + strand, within Shewana3_0607 at 712.335 kb on + strand at 712.343 kb on - strand at 712.541 kb on + strand at 712.797 kb on - strand, within Shewana3_0608 at 712.838 kb on - strand, within Shewana3_0608 at 713.116 kb on - strand, within Shewana3_0608 at 713.124 kb on + strand, within Shewana3_0608
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 708,810 + Shewana3_0606 0.11 +0.9 708,900 - Shewana3_0606 0.27 +0.0 709,085 + Shewana3_0606 0.59 -0.2 709,343 + -0.8 709,351 - -1.0 709,499 + +0.0 709,757 + -0.9 709,886 + -0.4 709,926 + -0.7 709,926 + -1.4 709,926 + -0.0 709,948 + -2.3 710,075 - Shewana3_0607 0.12 -0.0 710,135 + Shewana3_0607 0.15 -0.0 710,143 - Shewana3_0607 0.15 +0.1 710,153 - Shewana3_0607 0.15 -0.2 710,300 - Shewana3_0607 0.21 -1.1 710,410 + Shewana3_0607 0.26 -0.1 710,542 + Shewana3_0607 0.31 -0.7 710,769 + Shewana3_0607 0.40 +1.1 710,803 + Shewana3_0607 0.41 -0.5 710,824 + Shewana3_0607 0.42 +0.1 710,832 - Shewana3_0607 0.43 -0.1 711,099 - Shewana3_0607 0.53 +0.8 711,124 + Shewana3_0607 0.54 +0.1 711,233 + Shewana3_0607 0.59 -0.3 711,241 - Shewana3_0607 0.59 +0.2 711,417 + Shewana3_0607 0.66 -0.4 711,458 - Shewana3_0607 0.68 +0.1 711,687 - Shewana3_0607 0.77 -0.6 711,708 - Shewana3_0607 0.78 -0.7 711,719 + Shewana3_0607 0.78 -0.5 711,792 + Shewana3_0607 0.81 -0.2 711,959 + Shewana3_0607 0.88 +0.7 712,335 + -1.1 712,343 - +0.9 712,541 + -0.4 712,797 - Shewana3_0608 0.30 -3.0 712,838 - Shewana3_0608 0.33 -3.2 713,116 - Shewana3_0608 0.58 -0.6 713,124 + Shewana3_0608 0.58 +0.2
Or see this region's nucleotide sequence