Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0582 and Shewana3_0583 are separated by 144 nucleotides Shewana3_0583 and Shewana3_0584 are separated by 90 nucleotides Shewana3_0584 and Shewana3_0585 are separated by 23 nucleotides
Shewana3_0582: Shewana3_0582 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 681,888 to 683,462
_0582
Shewana3_0583: Shewana3_0583 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq), at 683,607 to 684,539
_0583
Shewana3_0584: Shewana3_0584 - hypothetical protein (RefSeq), at 684,630 to 684,965
_0584
Shewana3_0585: Shewana3_0585 - glycerophosphoryl diester phosphodiesterase (RefSeq), at 684,989 to 685,711
_0585
Position (kb) 683
684
685 Strain fitness (log2 ratio) -2
-1
0
1 at 682.696 kb on + strand, within Shewana3_0582 at 682.797 kb on + strand, within Shewana3_0582 at 682.952 kb on + strand, within Shewana3_0582 at 683.065 kb on + strand, within Shewana3_0582 at 683.229 kb on - strand, within Shewana3_0582 at 683.411 kb on + strand at 683.419 kb on - strand at 683.944 kb on - strand, within Shewana3_0583 at 683.986 kb on - strand, within Shewana3_0583 at 684.083 kb on - strand, within Shewana3_0583 at 684.083 kb on - strand, within Shewana3_0583 at 684.255 kb on + strand, within Shewana3_0583 at 684.263 kb on - strand, within Shewana3_0583 at 684.455 kb on + strand at 684.455 kb on + strand at 684.455 kb on + strand at 684.463 kb on - strand at 684.463 kb on - strand at 684.463 kb on - strand at 684.463 kb on - strand at 684.772 kb on - strand, within Shewana3_0584 at 684.772 kb on - strand, within Shewana3_0584 at 684.789 kb on - strand, within Shewana3_0584 at 684.813 kb on + strand, within Shewana3_0584 at 684.968 kb on - strand at 685.085 kb on - strand, within Shewana3_0585 at 685.087 kb on + strand, within Shewana3_0585 at 685.093 kb on - strand, within Shewana3_0585 at 685.130 kb on - strand, within Shewana3_0585 at 685.143 kb on + strand, within Shewana3_0585 at 685.201 kb on + strand, within Shewana3_0585 at 685.401 kb on - strand, within Shewana3_0585
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 682,696 + Shewana3_0582 0.51 -0.8 682,797 + Shewana3_0582 0.58 -0.2 682,952 + Shewana3_0582 0.68 -1.3 683,065 + Shewana3_0582 0.75 -0.2 683,229 - Shewana3_0582 0.85 -0.6 683,411 + +0.1 683,419 - -1.3 683,944 - Shewana3_0583 0.36 -0.6 683,986 - Shewana3_0583 0.41 -2.5 684,083 - Shewana3_0583 0.51 -0.6 684,083 - Shewana3_0583 0.51 +0.2 684,255 + Shewana3_0583 0.69 -1.5 684,263 - Shewana3_0583 0.70 -0.4 684,455 + -0.2 684,455 + +0.6 684,455 + -1.0 684,463 - -1.4 684,463 - +0.3 684,463 - -0.4 684,463 - -0.3 684,772 - Shewana3_0584 0.42 -2.0 684,772 - Shewana3_0584 0.42 -0.1 684,789 - Shewana3_0584 0.47 -1.7 684,813 + Shewana3_0584 0.54 +1.2 684,968 - -0.6 685,085 - Shewana3_0585 0.13 -0.3 685,087 + Shewana3_0585 0.14 -0.4 685,093 - Shewana3_0585 0.14 +0.1 685,130 - Shewana3_0585 0.20 +0.3 685,143 + Shewana3_0585 0.21 -0.4 685,201 + Shewana3_0585 0.29 -0.1 685,401 - Shewana3_0585 0.57 -0.0
Or see this region's nucleotide sequence