Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0575 and Shewana3_0576 are separated by 220 nucleotides Shewana3_0576 and Shewana3_0577 are separated by 82 nucleotides
Shewana3_0575: Shewana3_0575 - PhoH family protein (RefSeq), at 670,239 to 671,633
_0575
Shewana3_0576: Shewana3_0576 - multi-sensor hybrid histidine kinase (RefSeq), at 671,854 to 675,564
_0576
Shewana3_0577: Shewana3_0577 - hypothetical protein (RefSeq), at 675,647 to 678,049
_0577
Position (kb) 671
672
673
674
675
676 Strain fitness (log2 ratio) -2
-1
0
1
2 at 670.951 kb on + strand, within Shewana3_0575 at 671.507 kb on - strand at 671.574 kb on - strand at 671.970 kb on - strand at 672.073 kb on + strand at 672.108 kb on + strand at 672.229 kb on + strand, within Shewana3_0576 at 672.273 kb on + strand, within Shewana3_0576 at 672.312 kb on + strand, within Shewana3_0576 at 672.312 kb on + strand, within Shewana3_0576 at 672.399 kb on + strand, within Shewana3_0576 at 672.501 kb on + strand, within Shewana3_0576 at 672.520 kb on + strand, within Shewana3_0576 at 672.539 kb on + strand, within Shewana3_0576 at 672.539 kb on + strand, within Shewana3_0576 at 672.778 kb on - strand, within Shewana3_0576 at 672.783 kb on - strand, within Shewana3_0576 at 672.917 kb on + strand, within Shewana3_0576 at 672.959 kb on - strand, within Shewana3_0576 at 673.095 kb on - strand, within Shewana3_0576 at 673.490 kb on + strand, within Shewana3_0576 at 673.977 kb on + strand, within Shewana3_0576 at 674.258 kb on + strand, within Shewana3_0576 at 674.698 kb on - strand, within Shewana3_0576 at 674.709 kb on + strand, within Shewana3_0576 at 674.709 kb on + strand, within Shewana3_0576 at 674.717 kb on - strand, within Shewana3_0576 at 674.767 kb on - strand, within Shewana3_0576 at 675.195 kb on - strand at 675.317 kb on + strand at 675.393 kb on + strand at 675.506 kb on + strand at 675.544 kb on - strand at 675.544 kb on - strand at 675.544 kb on - strand at 675.606 kb on - strand at 675.653 kb on + strand at 675.742 kb on + strand at 675.802 kb on - strand at 675.859 kb on + strand at 675.907 kb on - strand, within Shewana3_0577 at 675.932 kb on + strand, within Shewana3_0577 at 676.010 kb on + strand, within Shewana3_0577 at 676.307 kb on + strand, within Shewana3_0577 at 676.473 kb on - strand, within Shewana3_0577 at 676.478 kb on - strand, within Shewana3_0577 at 676.519 kb on + strand, within Shewana3_0577 at 676.544 kb on + strand, within Shewana3_0577
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 670,951 + Shewana3_0575 0.51 +1.0 671,507 - -0.3 671,574 - -0.1 671,970 - +0.9 672,073 + -1.9 672,108 + -1.7 672,229 + Shewana3_0576 0.10 -0.4 672,273 + Shewana3_0576 0.11 -0.4 672,312 + Shewana3_0576 0.12 +0.3 672,312 + Shewana3_0576 0.12 -1.3 672,399 + Shewana3_0576 0.15 -1.4 672,501 + Shewana3_0576 0.17 +0.1 672,520 + Shewana3_0576 0.18 -2.0 672,539 + Shewana3_0576 0.18 -1.4 672,539 + Shewana3_0576 0.18 -2.5 672,778 - Shewana3_0576 0.25 +0.9 672,783 - Shewana3_0576 0.25 +0.9 672,917 + Shewana3_0576 0.29 -0.1 672,959 - Shewana3_0576 0.30 +0.9 673,095 - Shewana3_0576 0.33 +1.9 673,490 + Shewana3_0576 0.44 -1.1 673,977 + Shewana3_0576 0.57 +0.3 674,258 + Shewana3_0576 0.65 -0.4 674,698 - Shewana3_0576 0.77 -1.4 674,709 + Shewana3_0576 0.77 -0.4 674,709 + Shewana3_0576 0.77 -1.9 674,717 - Shewana3_0576 0.77 +0.3 674,767 - Shewana3_0576 0.78 -0.4 675,195 - +1.9 675,317 + -0.7 675,393 + -1.3 675,506 + -0.9 675,544 - +0.3 675,544 - -0.9 675,544 - -0.2 675,606 - -0.0 675,653 + -1.0 675,742 + -0.1 675,802 - -1.1 675,859 + -0.3 675,907 - Shewana3_0577 0.11 -0.4 675,932 + Shewana3_0577 0.12 -0.3 676,010 + Shewana3_0577 0.15 +0.2 676,307 + Shewana3_0577 0.27 -0.4 676,473 - Shewana3_0577 0.34 -0.1 676,478 - Shewana3_0577 0.35 -0.9 676,519 + Shewana3_0577 0.36 -0.2 676,544 + Shewana3_0577 0.37 -0.0
Or see this region's nucleotide sequence