Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0572 and Shewana3_0573 are separated by 65 nucleotides Shewana3_0573 and Shewana3_0574 are separated by 238 nucleotides
Shewana3_0572: Shewana3_0572 - enoyl-CoA hydratase (RefSeq), at 664,860 to 665,666
_0572
Shewana3_0573: Shewana3_0573 - hypothetical protein (RefSeq), at 665,732 to 666,691
_0573
Shewana3_0574: Shewana3_0574 - ATP-dependent helicase HepA (RefSeq), at 666,930 to 669,836
_0574
Position (kb) 665
666
667 Strain fitness (log2 ratio) -1
0
1
2 at 664.903 kb on + strand at 664.911 kb on - strand at 665.159 kb on + strand, within Shewana3_0572 at 665.159 kb on + strand, within Shewana3_0572 at 665.186 kb on + strand, within Shewana3_0572 at 665.192 kb on - strand, within Shewana3_0572 at 665.295 kb on + strand, within Shewana3_0572 at 665.544 kb on + strand, within Shewana3_0572 at 665.544 kb on + strand, within Shewana3_0572 at 665.546 kb on + strand, within Shewana3_0572 at 665.552 kb on - strand, within Shewana3_0572 at 665.552 kb on - strand, within Shewana3_0572 at 665.552 kb on - strand, within Shewana3_0572 at 665.569 kb on + strand, within Shewana3_0572 at 665.772 kb on - strand at 665.846 kb on + strand, within Shewana3_0573 at 666.221 kb on + strand, within Shewana3_0573 at 666.229 kb on - strand, within Shewana3_0573 at 666.304 kb on + strand, within Shewana3_0573 at 666.312 kb on - strand, within Shewana3_0573 at 666.437 kb on + strand, within Shewana3_0573 at 666.437 kb on + strand, within Shewana3_0573 at 666.581 kb on - strand, within Shewana3_0573 at 666.670 kb on - strand at 666.696 kb on - strand at 666.815 kb on - strand at 666.837 kb on - strand at 666.927 kb on + strand at 666.935 kb on - strand at 667.477 kb on - strand, within Shewana3_0574 at 667.478 kb on - strand, within Shewana3_0574
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 664,903 + -0.8 664,911 - +0.3 665,159 + Shewana3_0572 0.37 -0.3 665,159 + Shewana3_0572 0.37 -0.4 665,186 + Shewana3_0572 0.40 +0.0 665,192 - Shewana3_0572 0.41 +1.9 665,295 + Shewana3_0572 0.54 -0.7 665,544 + Shewana3_0572 0.85 -0.1 665,544 + Shewana3_0572 0.85 +1.1 665,546 + Shewana3_0572 0.85 -0.4 665,552 - Shewana3_0572 0.86 -0.7 665,552 - Shewana3_0572 0.86 +1.9 665,552 - Shewana3_0572 0.86 -0.7 665,569 + Shewana3_0572 0.88 +0.4 665,772 - -0.9 665,846 + Shewana3_0573 0.12 +0.5 666,221 + Shewana3_0573 0.51 -0.2 666,229 - Shewana3_0573 0.52 -0.2 666,304 + Shewana3_0573 0.60 +0.6 666,312 - Shewana3_0573 0.60 +1.5 666,437 + Shewana3_0573 0.73 +0.4 666,437 + Shewana3_0573 0.73 +0.4 666,581 - Shewana3_0573 0.88 +0.5 666,670 - -0.2 666,696 - -0.6 666,815 - -1.6 666,837 - -0.4 666,927 + +1.9 666,935 - +0.5 667,477 - Shewana3_0574 0.19 +0.8 667,478 - Shewana3_0574 0.19 +0.3
Or see this region's nucleotide sequence