Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0566 and Shewana3_0567 are separated by 4 nucleotides Shewana3_0567 and Shewana3_0568 are separated by 156 nucleotides Shewana3_0568 and Shewana3_0569 are separated by 43 nucleotides Shewana3_0569 and Shewana3_0570 are separated by 57 nucleotides
Shewana3_0566: Shewana3_0566 - periplasmic solute binding protein (RefSeq), at 659,185 to 660,093
_0566
Shewana3_0567: Shewana3_0567 - ABC-3 protein (RefSeq), at 660,098 to 660,865
_0567
Shewana3_0568: Shewana3_0568 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (RefSeq), at 661,022 to 661,804
_0568
Shewana3_0569: Shewana3_0569 - hypothetical protein (RefSeq), at 661,848 to 662,255
_0569
Shewana3_0570: Shewana3_0570 - diguanylate cyclase (RefSeq), at 662,313 to 663,287
_0570
Position (kb) 661
662 Strain fitness (log2 ratio) -1
0
1 at 660.052 kb on + strand at 660.052 kb on + strand at 660.052 kb on + strand at 660.060 kb on - strand at 660.235 kb on - strand, within Shewana3_0567 at 660.266 kb on + strand, within Shewana3_0567 at 660.281 kb on - strand, within Shewana3_0567 at 660.450 kb on + strand, within Shewana3_0567 at 660.695 kb on + strand, within Shewana3_0567 at 660.729 kb on + strand, within Shewana3_0567 at 660.775 kb on - strand, within Shewana3_0567 at 660.805 kb on - strand at 660.929 kb on + strand at 661.077 kb on + strand at 661.149 kb on - strand, within Shewana3_0568 at 661.202 kb on + strand, within Shewana3_0568 at 661.303 kb on + strand, within Shewana3_0568 at 661.303 kb on + strand, within Shewana3_0568 at 661.311 kb on - strand, within Shewana3_0568 at 661.311 kb on - strand, within Shewana3_0568 at 661.311 kb on - strand, within Shewana3_0568 at 661.375 kb on + strand, within Shewana3_0568 at 661.538 kb on - strand, within Shewana3_0568 at 661.563 kb on + strand, within Shewana3_0568 at 661.635 kb on + strand, within Shewana3_0568 at 661.709 kb on + strand, within Shewana3_0568 at 662.345 kb on - strand at 662.390 kb on - strand at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.452 kb on - strand, within Shewana3_0570 at 662.452 kb on - strand, within Shewana3_0570 at 662.452 kb on - strand, within Shewana3_0570 at 662.452 kb on - strand, within Shewana3_0570 at 662.529 kb on + strand, within Shewana3_0570 at 662.582 kb on - strand, within Shewana3_0570 at 662.627 kb on + strand, within Shewana3_0570 at 662.707 kb on - strand, within Shewana3_0570 at 662.707 kb on - strand, within Shewana3_0570 at 662.801 kb on + strand, within Shewana3_0570
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 660,052 + +0.7 660,052 + -0.1 660,052 + +0.4 660,060 - +0.1 660,235 - Shewana3_0567 0.18 -0.0 660,266 + Shewana3_0567 0.22 +0.6 660,281 - Shewana3_0567 0.24 -0.1 660,450 + Shewana3_0567 0.46 +0.3 660,695 + Shewana3_0567 0.78 -0.1 660,729 + Shewana3_0567 0.82 +0.9 660,775 - Shewana3_0567 0.88 -1.5 660,805 - +0.5 660,929 + -1.1 661,077 + -0.6 661,149 - Shewana3_0568 0.16 +1.2 661,202 + Shewana3_0568 0.23 -0.8 661,303 + Shewana3_0568 0.36 +0.6 661,303 + Shewana3_0568 0.36 +0.1 661,311 - Shewana3_0568 0.37 -0.3 661,311 - Shewana3_0568 0.37 -0.3 661,311 - Shewana3_0568 0.37 +0.4 661,375 + Shewana3_0568 0.45 +0.3 661,538 - Shewana3_0568 0.66 +0.2 661,563 + Shewana3_0568 0.69 +0.4 661,635 + Shewana3_0568 0.78 +0.4 661,709 + Shewana3_0568 0.88 -0.0 662,345 - +0.3 662,390 - +0.0 662,444 + Shewana3_0570 0.13 -0.8 662,444 + Shewana3_0570 0.13 -0.6 662,444 + Shewana3_0570 0.13 -0.8 662,444 + Shewana3_0570 0.13 -0.6 662,444 + Shewana3_0570 0.13 -1.7 662,444 + Shewana3_0570 0.13 -0.3 662,452 - Shewana3_0570 0.14 +0.2 662,452 - Shewana3_0570 0.14 +0.3 662,452 - Shewana3_0570 0.14 +0.6 662,452 - Shewana3_0570 0.14 +0.4 662,529 + Shewana3_0570 0.22 -1.0 662,582 - Shewana3_0570 0.28 -0.4 662,627 + Shewana3_0570 0.32 -0.6 662,707 - Shewana3_0570 0.40 +0.2 662,707 - Shewana3_0570 0.40 -0.5 662,801 + Shewana3_0570 0.50 +1.2
Or see this region's nucleotide sequence