Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0559 and Shewana3_0560 are separated by 240 nucleotides Shewana3_0560 and Shewana3_0561 are separated by 79 nucleotides
Shewana3_0559: Shewana3_0559 - aldo/keto reductase (RefSeq), at 652,057 to 652,947
_0559
Shewana3_0560: Shewana3_0560 - formate--tetrahydrofolate ligase (RefSeq), at 653,188 to 654,900
_0560
Shewana3_0561: Shewana3_0561 - MscS mechanosensitive ion channel (RefSeq), at 654,980 to 656,635
_0561
Position (kb) 653
654
655 Strain fitness (log2 ratio) -2
-1
0
1 at 652.260 kb on + strand, within Shewana3_0559 at 652.317 kb on - strand, within Shewana3_0559 at 652.345 kb on - strand, within Shewana3_0559 at 652.345 kb on - strand, within Shewana3_0559 at 652.360 kb on - strand, within Shewana3_0559 at 652.506 kb on - strand, within Shewana3_0559 at 652.626 kb on + strand, within Shewana3_0559 at 652.668 kb on + strand, within Shewana3_0559 at 652.676 kb on - strand, within Shewana3_0559 at 652.836 kb on + strand, within Shewana3_0559 at 652.836 kb on + strand, within Shewana3_0559 at 652.856 kb on + strand, within Shewana3_0559 at 653.325 kb on + strand at 653.452 kb on - strand, within Shewana3_0560 at 653.462 kb on + strand, within Shewana3_0560 at 653.480 kb on - strand, within Shewana3_0560 at 653.540 kb on - strand, within Shewana3_0560 at 653.594 kb on + strand, within Shewana3_0560 at 653.626 kb on + strand, within Shewana3_0560 at 653.652 kb on - strand, within Shewana3_0560 at 653.652 kb on - strand, within Shewana3_0560 at 653.655 kb on + strand, within Shewana3_0560 at 653.725 kb on - strand, within Shewana3_0560 at 653.747 kb on + strand, within Shewana3_0560 at 653.791 kb on + strand, within Shewana3_0560 at 653.944 kb on - strand, within Shewana3_0560 at 654.144 kb on - strand, within Shewana3_0560 at 654.215 kb on + strand, within Shewana3_0560 at 654.215 kb on + strand, within Shewana3_0560 at 654.493 kb on - strand, within Shewana3_0560 at 654.527 kb on + strand, within Shewana3_0560 at 654.537 kb on + strand, within Shewana3_0560 at 654.590 kb on - strand, within Shewana3_0560 at 654.604 kb on + strand, within Shewana3_0560 at 654.718 kb on - strand, within Shewana3_0560 at 654.812 kb on - strand at 654.812 kb on - strand at 654.844 kb on - strand at 654.849 kb on - strand at 655.186 kb on + strand, within Shewana3_0561 at 655.204 kb on - strand, within Shewana3_0561 at 655.285 kb on - strand, within Shewana3_0561 at 655.328 kb on + strand, within Shewana3_0561 at 655.731 kb on - strand, within Shewana3_0561 at 655.759 kb on - strand, within Shewana3_0561
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 652,260 + Shewana3_0559 0.23 +0.4 652,317 - Shewana3_0559 0.29 -0.0 652,345 - Shewana3_0559 0.32 +0.7 652,345 - Shewana3_0559 0.32 -1.4 652,360 - Shewana3_0559 0.34 +0.4 652,506 - Shewana3_0559 0.50 -0.1 652,626 + Shewana3_0559 0.64 -1.2 652,668 + Shewana3_0559 0.69 +0.3 652,676 - Shewana3_0559 0.69 +0.2 652,836 + Shewana3_0559 0.87 -0.3 652,836 + Shewana3_0559 0.87 +0.0 652,856 + Shewana3_0559 0.90 -0.3 653,325 + -0.3 653,452 - Shewana3_0560 0.15 -0.2 653,462 + Shewana3_0560 0.16 +0.2 653,480 - Shewana3_0560 0.17 +0.0 653,540 - Shewana3_0560 0.21 +0.2 653,594 + Shewana3_0560 0.24 +0.0 653,626 + Shewana3_0560 0.26 -0.1 653,652 - Shewana3_0560 0.27 +0.4 653,652 - Shewana3_0560 0.27 -2.4 653,655 + Shewana3_0560 0.27 +0.4 653,725 - Shewana3_0560 0.31 +0.2 653,747 + Shewana3_0560 0.33 +0.5 653,791 + Shewana3_0560 0.35 +1.0 653,944 - Shewana3_0560 0.44 +0.2 654,144 - Shewana3_0560 0.56 -0.1 654,215 + Shewana3_0560 0.60 +1.0 654,215 + Shewana3_0560 0.60 +0.4 654,493 - Shewana3_0560 0.76 +1.6 654,527 + Shewana3_0560 0.78 +0.1 654,537 + Shewana3_0560 0.79 +0.0 654,590 - Shewana3_0560 0.82 -0.5 654,604 + Shewana3_0560 0.83 +0.5 654,718 - Shewana3_0560 0.89 -1.0 654,812 - -0.9 654,812 - -1.4 654,844 - -1.2 654,849 - -0.8 655,186 + Shewana3_0561 0.12 -0.2 655,204 - Shewana3_0561 0.14 -0.6 655,285 - Shewana3_0561 0.18 +0.1 655,328 + Shewana3_0561 0.21 -0.2 655,731 - Shewana3_0561 0.45 +0.1 655,759 - Shewana3_0561 0.47 -0.1
Or see this region's nucleotide sequence