Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0535 and Shewana3_0536 are separated by 4 nucleotides Shewana3_0536 and Shewana3_0537 are separated by 118 nucleotides
Shewana3_0535: Shewana3_0535 - major facilitator transporter (RefSeq), at 628,904 to 630,172
_0535
Shewana3_0536: Shewana3_0536 - hypothetical protein (RefSeq), at 630,177 to 631,040
_0536
Shewana3_0537: Shewana3_0537 - aspartate kinase (RefSeq), at 631,159 to 632,601
_0537
Position (kb) 630
631
632 Strain fitness (log2 ratio) -2
-1
0
1 at 629.488 kb on + strand, within Shewana3_0535 at 629.644 kb on + strand, within Shewana3_0535 at 629.735 kb on + strand, within Shewana3_0535 at 629.742 kb on + strand, within Shewana3_0535 at 629.775 kb on - strand at 629.816 kb on + strand, within Shewana3_0535 at 630.031 kb on - strand, within Shewana3_0535 at 630.078 kb on + strand at 630.084 kb on - strand at 630.185 kb on - strand at 630.269 kb on + strand, within Shewana3_0536 at 630.381 kb on - strand, within Shewana3_0536 at 630.450 kb on - strand, within Shewana3_0536 at 630.540 kb on - strand, within Shewana3_0536 at 630.763 kb on - strand, within Shewana3_0536 at 630.786 kb on - strand, within Shewana3_0536 at 630.848 kb on + strand, within Shewana3_0536 at 631.016 kb on + strand at 631.016 kb on + strand at 631.016 kb on + strand at 631.024 kb on - strand at 631.024 kb on - strand at 631.336 kb on + strand, within Shewana3_0537 at 631.344 kb on - strand, within Shewana3_0537 at 631.378 kb on - strand, within Shewana3_0537 at 631.392 kb on + strand, within Shewana3_0537 at 631.526 kb on + strand, within Shewana3_0537 at 631.534 kb on - strand, within Shewana3_0537 at 631.608 kb on + strand, within Shewana3_0537 at 631.682 kb on - strand, within Shewana3_0537 at 631.877 kb on - strand, within Shewana3_0537 at 632.000 kb on + strand, within Shewana3_0537
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 629,488 + Shewana3_0535 0.46 -0.0 629,644 + Shewana3_0535 0.58 -0.3 629,735 + Shewana3_0535 0.65 +0.0 629,742 + Shewana3_0535 0.66 +0.5 629,775 - +0.9 629,816 + Shewana3_0535 0.72 +0.3 630,031 - Shewana3_0535 0.89 -0.7 630,078 + -2.0 630,084 - +0.0 630,185 - -1.4 630,269 + Shewana3_0536 0.11 -1.3 630,381 - Shewana3_0536 0.24 -1.3 630,450 - Shewana3_0536 0.32 -0.1 630,540 - Shewana3_0536 0.42 -1.8 630,763 - Shewana3_0536 0.68 -1.0 630,786 - Shewana3_0536 0.70 -0.1 630,848 + Shewana3_0536 0.78 -0.1 631,016 + -0.4 631,016 + +0.2 631,016 + +0.0 631,024 - +0.3 631,024 - +0.1 631,336 + Shewana3_0537 0.12 -0.6 631,344 - Shewana3_0537 0.13 +0.1 631,378 - Shewana3_0537 0.15 +0.8 631,392 + Shewana3_0537 0.16 -0.3 631,526 + Shewana3_0537 0.25 +0.1 631,534 - Shewana3_0537 0.26 +0.2 631,608 + Shewana3_0537 0.31 +0.3 631,682 - Shewana3_0537 0.36 -0.4 631,877 - Shewana3_0537 0.50 -0.6 632,000 + Shewana3_0537 0.58 -0.2
Or see this region's nucleotide sequence