Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0530

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0529 and Shewana3_0530 are separated by 234 nucleotidesShewana3_0530 and Shewana3_0531 are separated by 99 nucleotides Shewana3_0529: Shewana3_0529 - hypothetical protein (RefSeq), at 623,259 to 624,098 _0529 Shewana3_0530: Shewana3_0530 - LysR family transcriptional regulator (RefSeq), at 624,333 to 625,199 _0530 Shewana3_0531: Shewana3_0531 - lysine exporter protein LysE/YggA (RefSeq), at 625,299 to 625,910 _0531 Position (kb) 624 625 626Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 623.362 kb on - strand, within Shewana3_0529at 623.376 kb on + strand, within Shewana3_0529at 623.376 kb on + strand, within Shewana3_0529at 623.376 kb on + strand, within Shewana3_0529at 623.376 kb on + strand, within Shewana3_0529at 623.384 kb on - strand, within Shewana3_0529at 623.384 kb on - strand, within Shewana3_0529at 623.384 kb on - strand, within Shewana3_0529at 623.386 kb on + strand, within Shewana3_0529at 623.386 kb on + strand, within Shewana3_0529at 623.386 kb on + strand, within Shewana3_0529at 623.386 kb on + strand, within Shewana3_0529at 623.386 kb on + strand, within Shewana3_0529at 623.386 kb on + strand, within Shewana3_0529at 623.386 kb on + strand, within Shewana3_0529at 623.386 kb on + strand, within Shewana3_0529at 623.386 kb on + strand, within Shewana3_0529at 623.386 kb on + strand, within Shewana3_0529at 623.394 kb on - strand, within Shewana3_0529at 623.394 kb on - strand, within Shewana3_0529at 623.394 kb on - strand, within Shewana3_0529at 623.394 kb on - strand, within Shewana3_0529at 623.394 kb on - strand, within Shewana3_0529at 623.394 kb on - strand, within Shewana3_0529at 623.397 kb on + strand, within Shewana3_0529at 623.397 kb on + strand, within Shewana3_0529at 623.397 kb on + strand, within Shewana3_0529at 623.405 kb on - strand, within Shewana3_0529at 623.421 kb on + strand, within Shewana3_0529at 623.421 kb on + strand, within Shewana3_0529at 623.421 kb on + strand, within Shewana3_0529at 623.430 kb on + strand, within Shewana3_0529at 623.433 kb on + strand, within Shewana3_0529at 623.468 kb on + strand, within Shewana3_0529at 623.468 kb on + strand, within Shewana3_0529at 623.476 kb on - strand, within Shewana3_0529at 623.476 kb on - strand, within Shewana3_0529at 623.477 kb on + strand, within Shewana3_0529at 623.488 kb on - strand, within Shewana3_0529at 623.491 kb on + strand, within Shewana3_0529at 623.491 kb on + strand, within Shewana3_0529at 623.491 kb on + strand, within Shewana3_0529at 623.499 kb on - strand, within Shewana3_0529at 623.499 kb on - strand, within Shewana3_0529at 623.499 kb on - strand, within Shewana3_0529at 623.499 kb on - strand, within Shewana3_0529at 623.501 kb on + strand, within Shewana3_0529at 623.567 kb on + strand, within Shewana3_0529at 623.567 kb on + strand, within Shewana3_0529at 623.567 kb on + strand, within Shewana3_0529at 623.598 kb on - strand, within Shewana3_0529at 623.659 kb on + strand, within Shewana3_0529at 623.667 kb on - strand, within Shewana3_0529at 623.667 kb on - strand, within Shewana3_0529at 623.669 kb on + strand, within Shewana3_0529at 623.669 kb on + strand, within Shewana3_0529at 623.669 kb on + strand, within Shewana3_0529at 623.669 kb on + strand, within Shewana3_0529at 623.671 kb on + strand, within Shewana3_0529at 623.671 kb on + strand, within Shewana3_0529at 623.671 kb on + strand, within Shewana3_0529at 623.671 kb on + strand, within Shewana3_0529at 623.671 kb on + strand, within Shewana3_0529at 623.671 kb on + strand, within Shewana3_0529at 623.671 kb on + strand, within Shewana3_0529at 623.677 kb on - strand, within Shewana3_0529at 623.677 kb on - strand, within Shewana3_0529at 623.677 kb on - strand, within Shewana3_0529at 623.677 kb on - strand, within Shewana3_0529at 623.679 kb on - strand, within Shewana3_0529at 623.679 kb on - strand, within Shewana3_0529at 623.679 kb on - strand, within Shewana3_0529at 623.679 kb on - strand, within Shewana3_0529at 623.679 kb on - strand, within Shewana3_0529at 623.679 kb on - strand, within Shewana3_0529at 623.785 kb on + strand, within Shewana3_0529at 623.793 kb on - strand, within Shewana3_0529at 623.799 kb on + strand, within Shewana3_0529at 623.799 kb on + strand, within Shewana3_0529at 623.800 kb on - strand, within Shewana3_0529at 623.807 kb on - strand, within Shewana3_0529at 623.830 kb on + strand, within Shewana3_0529at 623.889 kb on + strand, within Shewana3_0529at 623.890 kb on + strand, within Shewana3_0529at 623.893 kb on - strand, within Shewana3_0529at 623.899 kb on + strand, within Shewana3_0529at 623.899 kb on + strand, within Shewana3_0529at 623.899 kb on - strand, within Shewana3_0529at 623.907 kb on - strand, within Shewana3_0529at 623.907 kb on - strand, within Shewana3_0529at 623.907 kb on - strand, within Shewana3_0529at 623.907 kb on - strand, within Shewana3_0529at 623.921 kb on - strand, within Shewana3_0529at 624.001 kb on + strand, within Shewana3_0529at 624.008 kb on + strand, within Shewana3_0529at 624.010 kb on + strand, within Shewana3_0529at 624.010 kb on + strand, within Shewana3_0529at 624.010 kb on + strand, within Shewana3_0529at 624.010 kb on + strand, within Shewana3_0529at 624.010 kb on + strand, within Shewana3_0529at 624.010 kb on + strand, within Shewana3_0529at 624.018 kb on - strandat 624.018 kb on - strandat 624.018 kb on - strandat 624.018 kb on - strandat 624.102 kb on - strandat 624.116 kb on + strandat 624.168 kb on + strandat 624.183 kb on + strandat 624.183 kb on + strandat 624.183 kb on + strandat 624.183 kb on + strandat 624.183 kb on + strandat 624.183 kb on + strandat 624.183 kb on + strandat 624.183 kb on + strandat 624.184 kb on + strandat 624.184 kb on + strandat 624.191 kb on - strandat 624.191 kb on - strandat 624.191 kb on - strandat 624.191 kb on - strandat 624.191 kb on - strandat 624.191 kb on - strandat 624.191 kb on - strandat 624.191 kb on - strandat 624.191 kb on - strandat 624.191 kb on - strandat 624.192 kb on - strandat 624.200 kb on + strandat 624.234 kb on + strandat 624.237 kb on - strandat 624.249 kb on + strandat 624.257 kb on - strandat 624.257 kb on - strandat 624.272 kb on - strandat 624.288 kb on - strandat 624.330 kb on + strandat 624.330 kb on + strandat 624.330 kb on + strandat 624.330 kb on + strandat 624.331 kb on + strandat 624.340 kb on + strandat 624.340 kb on + strandat 624.340 kb on + strandat 624.348 kb on - strandat 624.348 kb on - strandat 624.348 kb on - strandat 624.368 kb on + strandat 624.376 kb on - strandat 624.376 kb on - strandat 624.376 kb on - strandat 624.376 kb on - strandat 624.435 kb on + strand, within Shewana3_0530at 624.659 kb on + strand, within Shewana3_0530at 624.923 kb on + strand, within Shewana3_0530at 624.956 kb on + strand, within Shewana3_0530at 625.034 kb on + strand, within Shewana3_0530at 625.043 kb on - strand, within Shewana3_0530at 625.283 kb on + strandat 625.304 kb on - strandat 625.339 kb on + strandat 625.340 kb on + strandat 625.340 kb on + strandat 625.348 kb on - strandat 625.473 kb on + strand, within Shewana3_0531at 625.543 kb on + strand, within Shewana3_0531at 625.565 kb on - strand, within Shewana3_0531at 625.761 kb on + strand, within Shewana3_0531at 625.769 kb on - strand, within Shewana3_0531at 625.769 kb on - strand, within Shewana3_0531at 625.769 kb on - strand, within Shewana3_0531at 625.771 kb on + strand, within Shewana3_0531at 625.771 kb on + strand, within Shewana3_0531at 625.796 kb on - strand, within Shewana3_0531at 625.808 kb on + strand, within Shewana3_0531at 625.854 kb on - strandat 625.856 kb on + strandat 625.856 kb on + strandat 625.856 kb on + strandat 625.856 kb on + strandat 626.033 kb on + strandat 626.052 kb on + strandat 626.053 kb on - strandat 626.107 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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623,362 - Shewana3_0529 0.12 -0.9
623,376 + Shewana3_0529 0.14 -0.3
623,376 + Shewana3_0529 0.14 -1.0
623,376 + Shewana3_0529 0.14 -1.3
623,376 + Shewana3_0529 0.14 +0.1
623,384 - Shewana3_0529 0.15 -0.3
623,384 - Shewana3_0529 0.15 +0.3
623,384 - Shewana3_0529 0.15 -1.7
623,386 + Shewana3_0529 0.15 -1.5
623,386 + Shewana3_0529 0.15 +0.9
623,386 + Shewana3_0529 0.15 -1.9
623,386 + Shewana3_0529 0.15 -0.1
623,386 + Shewana3_0529 0.15 -2.1
623,386 + Shewana3_0529 0.15 -0.9
623,386 + Shewana3_0529 0.15 +2.5
623,386 + Shewana3_0529 0.15 +0.3
623,386 + Shewana3_0529 0.15 -0.5
623,386 + Shewana3_0529 0.15 -1.0
623,394 - Shewana3_0529 0.16 -0.9
623,394 - Shewana3_0529 0.16 -0.8
623,394 - Shewana3_0529 0.16 -2.3
623,394 - Shewana3_0529 0.16 -0.5
623,394 - Shewana3_0529 0.16 -0.1
623,394 - Shewana3_0529 0.16 -1.7
623,397 + Shewana3_0529 0.16 +0.9
623,397 + Shewana3_0529 0.16 -0.7
623,397 + Shewana3_0529 0.16 -0.8
623,405 - Shewana3_0529 0.17 -0.8
623,421 + Shewana3_0529 0.19 +1.9
623,421 + Shewana3_0529 0.19 -0.8
623,421 + Shewana3_0529 0.19 -0.9
623,430 + Shewana3_0529 0.20 -1.4
623,433 + Shewana3_0529 0.21 -2.3
623,468 + Shewana3_0529 0.25 -0.7
623,468 + Shewana3_0529 0.25 -0.5
623,476 - Shewana3_0529 0.26 +0.9
623,476 - Shewana3_0529 0.26 +0.3
623,477 + Shewana3_0529 0.26 +0.3
623,488 - Shewana3_0529 0.27 -0.5
623,491 + Shewana3_0529 0.28 -4.0
623,491 + Shewana3_0529 0.28 -0.1
623,491 + Shewana3_0529 0.28 -0.8
623,499 - Shewana3_0529 0.29 +0.9
623,499 - Shewana3_0529 0.29 -1.8
623,499 - Shewana3_0529 0.29 +0.9
623,499 - Shewana3_0529 0.29 -0.5
623,501 + Shewana3_0529 0.29 -1.3
623,567 + Shewana3_0529 0.37 -0.4
623,567 + Shewana3_0529 0.37 -1.7
623,567 + Shewana3_0529 0.37 -0.5
623,598 - Shewana3_0529 0.40 -1.2
623,659 + Shewana3_0529 0.48 -1.6
623,667 - Shewana3_0529 0.49 -0.9
623,667 - Shewana3_0529 0.49 +0.3
623,669 + Shewana3_0529 0.49 -2.7
623,669 + Shewana3_0529 0.49 -0.7
623,669 + Shewana3_0529 0.49 -1.7
623,669 + Shewana3_0529 0.49 +0.9
623,671 + Shewana3_0529 0.49 -1.7
623,671 + Shewana3_0529 0.49 -0.4
623,671 + Shewana3_0529 0.49 -2.3
623,671 + Shewana3_0529 0.49 +0.6
623,671 + Shewana3_0529 0.49 -0.5
623,671 + Shewana3_0529 0.49 -0.8
623,671 + Shewana3_0529 0.49 -1.1
623,677 - Shewana3_0529 0.50 -0.1
623,677 - Shewana3_0529 0.50 -0.3
623,677 - Shewana3_0529 0.50 -0.9
623,677 - Shewana3_0529 0.50 -0.1
623,679 - Shewana3_0529 0.50 -1.4
623,679 - Shewana3_0529 0.50 -1.1
623,679 - Shewana3_0529 0.50 -1.6
623,679 - Shewana3_0529 0.50 -0.7
623,679 - Shewana3_0529 0.50 -1.1
623,679 - Shewana3_0529 0.50 +0.3
623,785 + Shewana3_0529 0.63 -0.3
623,793 - Shewana3_0529 0.64 -1.1
623,799 + Shewana3_0529 0.64 -0.0
623,799 + Shewana3_0529 0.64 -0.5
623,800 - Shewana3_0529 0.64 -0.1
623,807 - Shewana3_0529 0.65 -0.7
623,830 + Shewana3_0529 0.68 -0.1
623,889 + Shewana3_0529 0.75 -2.1
623,890 + Shewana3_0529 0.75 +0.6
623,893 - Shewana3_0529 0.75 -0.1
623,899 + Shewana3_0529 0.76 -1.3
623,899 + Shewana3_0529 0.76 -2.4
623,899 - Shewana3_0529 0.76 -0.1
623,907 - Shewana3_0529 0.77 -1.2
623,907 - Shewana3_0529 0.77 -3.0
623,907 - Shewana3_0529 0.77 -1.3
623,907 - Shewana3_0529 0.77 -1.5
623,921 - Shewana3_0529 0.79 +0.9
624,001 + Shewana3_0529 0.88 -0.5
624,008 + Shewana3_0529 0.89 -0.0
624,010 + Shewana3_0529 0.89 -0.8
624,010 + Shewana3_0529 0.89 +0.3
624,010 + Shewana3_0529 0.89 +1.0
624,010 + Shewana3_0529 0.89 -1.1
624,010 + Shewana3_0529 0.89 +0.1
624,010 + Shewana3_0529 0.89 -0.4
624,018 - -1.4
624,018 - -0.9
624,018 - -1.1
624,018 - +0.0
624,102 - +0.4
624,116 + -1.7
624,168 + -0.9
624,183 + -0.1
624,183 + -2.4
624,183 + +0.7
624,183 + -1.1
624,183 + -1.5
624,183 + -0.7
624,183 + -1.8
624,183 + -0.7
624,184 + -0.8
624,184 + +0.6
624,191 - -1.3
624,191 - -1.3
624,191 - -1.2
624,191 - -0.8
624,191 - -1.7
624,191 - -0.2
624,191 - -1.3
624,191 - -1.6
624,191 - +0.5
624,191 - -3.5
624,192 - +0.5
624,200 + -1.2
624,234 + -1.1
624,237 - +0.6
624,249 + +0.2
624,257 - -0.4
624,257 - -0.5
624,272 - -0.8
624,288 - +0.3
624,330 + +0.2
624,330 + +0.5
624,330 + -0.3
624,330 + -0.6
624,331 + -0.9
624,340 + -0.2
624,340 + -0.1
624,340 + -0.5
624,348 - +0.1
624,348 - -0.5
624,348 - +0.2
624,368 + -1.3
624,376 - -1.3
624,376 - -0.1
624,376 - -0.1
624,376 - -0.1
624,435 + Shewana3_0530 0.12 -0.1
624,659 + Shewana3_0530 0.38 -1.7
624,923 + Shewana3_0530 0.68 -2.1
624,956 + Shewana3_0530 0.72 +0.6
625,034 + Shewana3_0530 0.81 -1.9
625,043 - Shewana3_0530 0.82 +0.5
625,283 + -0.7
625,304 - -0.9
625,339 + -0.8
625,340 + -0.1
625,340 + -1.1
625,348 - -0.6
625,473 + Shewana3_0531 0.28 -0.6
625,543 + Shewana3_0531 0.40 +0.3
625,565 - Shewana3_0531 0.43 +0.9
625,761 + Shewana3_0531 0.75 +0.2
625,769 - Shewana3_0531 0.77 -1.5
625,769 - Shewana3_0531 0.77 +0.7
625,769 - Shewana3_0531 0.77 -2.5
625,771 + Shewana3_0531 0.77 -0.1
625,771 + Shewana3_0531 0.77 +0.3
625,796 - Shewana3_0531 0.81 -0.7
625,808 + Shewana3_0531 0.83 +0.5
625,854 - -1.3
625,856 + +0.2
625,856 + +0.1
625,856 + -0.1
625,856 + +0.9
626,033 + +0.1
626,052 + +0.2
626,053 - -0.2
626,107 - -1.3

Or see this region's nucleotide sequence