Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0524 and Shewana3_0525 are separated by 43 nucleotides Shewana3_0525 and Shewana3_0526 are separated by 380 nucleotides Shewana3_0526 and Shewana3_0527 are separated by 250 nucleotides
Shewana3_0524: Shewana3_0524 - GCN5-related N-acetyltransferase (RefSeq), at 615,692 to 616,165
_0524
Shewana3_0525: Shewana3_0525 - antibiotic biosynthesis monooxygenase (RefSeq), at 616,209 to 616,535
_0525
Shewana3_0526: Shewana3_0526 - sigma-54 dependent trancsriptional regulator (RefSeq), at 616,916 to 618,280
_0526
Shewana3_0527: Shewana3_0527 - hypothetical protein (RefSeq), at 618,531 to 620,195
_0527
Position (kb)
616
617
618
619 Strain fitness (log2 ratio)
-2
-1
0
1 at 615.936 kb on + strand, within Shewana3_0524 at 616.031 kb on - strand, within Shewana3_0524 at 616.092 kb on + strand, within Shewana3_0524 at 616.348 kb on + strand, within Shewana3_0525 at 616.369 kb on - strand, within Shewana3_0525 at 616.441 kb on + strand, within Shewana3_0525 at 616.449 kb on - strand, within Shewana3_0525 at 617.027 kb on + strand at 617.046 kb on - strand at 617.108 kb on - strand, within Shewana3_0526 at 617.200 kb on - strand, within Shewana3_0526 at 617.205 kb on + strand, within Shewana3_0526 at 617.339 kb on + strand, within Shewana3_0526 at 617.468 kb on + strand, within Shewana3_0526 at 617.553 kb on + strand, within Shewana3_0526 at 617.553 kb on + strand, within Shewana3_0526 at 617.566 kb on - strand, within Shewana3_0526 at 617.631 kb on + strand, within Shewana3_0526 at 617.946 kb on + strand, within Shewana3_0526 at 617.954 kb on - strand, within Shewana3_0526 at 618.105 kb on + strand, within Shewana3_0526 at 618.120 kb on + strand, within Shewana3_0526 at 618.144 kb on - strand at 618.154 kb on - strand at 618.154 kb on - strand at 618.223 kb on + strand at 618.264 kb on + strand at 618.272 kb on - strand at 618.273 kb on - strand at 618.274 kb on + strand at 618.274 kb on + strand at 618.282 kb on - strand at 618.295 kb on - strand at 618.325 kb on + strand at 618.429 kb on - strand at 618.439 kb on - strand at 618.526 kb on - strand at 618.548 kb on + strand at 618.548 kb on + strand at 618.565 kb on - strand at 618.565 kb on - strand at 618.601 kb on - strand at 618.627 kb on + strand at 618.720 kb on - strand, within Shewana3_0527 at 618.720 kb on - strand, within Shewana3_0527 at 618.760 kb on + strand, within Shewana3_0527 at 619.227 kb on - strand, within Shewana3_0527
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 615,936 + Shewana3_0524 0.51 -0.1 616,031 - Shewana3_0524 0.72 +0.4 616,092 + Shewana3_0524 0.84 +0.4 616,348 + Shewana3_0525 0.43 +0.3 616,369 - Shewana3_0525 0.49 -0.2 616,441 + Shewana3_0525 0.71 -0.1 616,449 - Shewana3_0525 0.73 -0.1 617,027 + -1.4 617,046 - -1.4 617,108 - Shewana3_0526 0.14 -1.9 617,200 - Shewana3_0526 0.21 -0.9 617,205 + Shewana3_0526 0.21 -0.0 617,339 + Shewana3_0526 0.31 +0.2 617,468 + Shewana3_0526 0.40 -0.1 617,553 + Shewana3_0526 0.47 +0.6 617,553 + Shewana3_0526 0.47 -0.8 617,566 - Shewana3_0526 0.48 -2.2 617,631 + Shewana3_0526 0.52 +0.1 617,946 + Shewana3_0526 0.75 -0.6 617,954 - Shewana3_0526 0.76 +0.8 618,105 + Shewana3_0526 0.87 -0.9 618,120 + Shewana3_0526 0.88 -0.5 618,144 - +0.0 618,154 - +0.4 618,154 - +0.8 618,223 + -1.3 618,264 + -0.9 618,272 - +0.4 618,273 - +0.1 618,274 + -1.1 618,274 + +1.5 618,282 - +0.1 618,295 - -0.5 618,325 + -0.2 618,429 - -0.1 618,439 - -0.4 618,526 - -0.6 618,548 + -0.6 618,548 + -0.6 618,565 - -0.2 618,565 - -1.0 618,601 - +0.5 618,627 + -0.1 618,720 - Shewana3_0527 0.11 -0.5 618,720 - Shewana3_0527 0.11 -1.6 618,760 + Shewana3_0527 0.14 +0.0 619,227 - Shewana3_0527 0.42 -0.7
Or see this region's nucleotide sequence