Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0522 and Shewana3_0523 are separated by 13 nucleotides Shewana3_0523 and Shewana3_0524 are separated by 126 nucleotides Shewana3_0524 and Shewana3_0525 are separated by 43 nucleotides
Shewana3_0522: Shewana3_0522 - secretion protein HlyD family protein (RefSeq), at 612,889 to 613,944
_0522
Shewana3_0523: Shewana3_0523 - EmrB/QacA family drug resistance transporter (RefSeq), at 613,958 to 615,565
_0523
Shewana3_0524: Shewana3_0524 - GCN5-related N-acetyltransferase (RefSeq), at 615,692 to 616,165
_0524
Shewana3_0525: Shewana3_0525 - antibiotic biosynthesis monooxygenase (RefSeq), at 616,209 to 616,535
_0525
Position (kb) 613
614
615
616 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 613.083 kb on + strand, within Shewana3_0522 at 613.163 kb on + strand, within Shewana3_0522 at 613.287 kb on - strand, within Shewana3_0522 at 613.287 kb on - strand, within Shewana3_0522 at 613.326 kb on + strand, within Shewana3_0522 at 613.359 kb on - strand, within Shewana3_0522 at 613.391 kb on - strand, within Shewana3_0522 at 613.454 kb on - strand, within Shewana3_0522 at 613.529 kb on + strand, within Shewana3_0522 at 613.556 kb on - strand, within Shewana3_0522 at 613.591 kb on - strand, within Shewana3_0522 at 613.616 kb on - strand, within Shewana3_0522 at 613.618 kb on + strand, within Shewana3_0522 at 613.626 kb on - strand, within Shewana3_0522 at 613.683 kb on + strand, within Shewana3_0522 at 613.686 kb on - strand, within Shewana3_0522 at 613.812 kb on + strand, within Shewana3_0522 at 613.812 kb on + strand, within Shewana3_0522 at 613.898 kb on - strand at 613.992 kb on - strand at 613.998 kb on + strand at 614.006 kb on - strand at 614.006 kb on - strand at 614.128 kb on - strand, within Shewana3_0523 at 614.264 kb on + strand, within Shewana3_0523 at 614.277 kb on + strand, within Shewana3_0523 at 614.313 kb on - strand, within Shewana3_0523 at 614.315 kb on + strand, within Shewana3_0523 at 614.795 kb on - strand, within Shewana3_0523 at 614.865 kb on - strand, within Shewana3_0523 at 614.930 kb on + strand, within Shewana3_0523 at 615.099 kb on + strand, within Shewana3_0523 at 615.117 kb on + strand, within Shewana3_0523 at 615.125 kb on - strand, within Shewana3_0523 at 615.321 kb on + strand, within Shewana3_0523 at 615.327 kb on - strand, within Shewana3_0523 at 615.390 kb on - strand, within Shewana3_0523 at 615.403 kb on + strand, within Shewana3_0523 at 615.403 kb on + strand, within Shewana3_0523 at 615.411 kb on - strand at 615.439 kb on + strand at 615.573 kb on - strand at 615.590 kb on + strand at 615.639 kb on + strand at 615.746 kb on + strand, within Shewana3_0524 at 615.909 kb on - strand, within Shewana3_0524 at 615.936 kb on + strand, within Shewana3_0524 at 616.031 kb on - strand, within Shewana3_0524 at 616.092 kb on + strand, within Shewana3_0524 at 616.348 kb on + strand, within Shewana3_0525 at 616.369 kb on - strand, within Shewana3_0525 at 616.441 kb on + strand, within Shewana3_0525 at 616.449 kb on - strand, within Shewana3_0525
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 613,083 + Shewana3_0522 0.18 +0.1 613,163 + Shewana3_0522 0.26 +0.8 613,287 - Shewana3_0522 0.38 +0.4 613,287 - Shewana3_0522 0.38 -0.0 613,326 + Shewana3_0522 0.41 +0.1 613,359 - Shewana3_0522 0.45 -0.3 613,391 - Shewana3_0522 0.48 -1.8 613,454 - Shewana3_0522 0.54 -0.9 613,529 + Shewana3_0522 0.61 +0.4 613,556 - Shewana3_0522 0.63 -1.5 613,591 - Shewana3_0522 0.66 -1.0 613,616 - Shewana3_0522 0.69 +0.1 613,618 + Shewana3_0522 0.69 +0.7 613,626 - Shewana3_0522 0.70 -1.1 613,683 + Shewana3_0522 0.75 -0.3 613,686 - Shewana3_0522 0.75 -0.0 613,812 + Shewana3_0522 0.87 +0.2 613,812 + Shewana3_0522 0.87 +0.5 613,898 - -1.3 613,992 - +0.7 613,998 + +0.8 614,006 - -1.1 614,006 - -0.4 614,128 - Shewana3_0523 0.11 -0.5 614,264 + Shewana3_0523 0.19 -0.4 614,277 + Shewana3_0523 0.20 +0.2 614,313 - Shewana3_0523 0.22 +0.1 614,315 + Shewana3_0523 0.22 +0.0 614,795 - Shewana3_0523 0.52 -2.5 614,865 - Shewana3_0523 0.56 -0.6 614,930 + Shewana3_0523 0.60 -0.5 615,099 + Shewana3_0523 0.71 +0.2 615,117 + Shewana3_0523 0.72 +0.0 615,125 - Shewana3_0523 0.73 -0.5 615,321 + Shewana3_0523 0.85 -0.4 615,327 - Shewana3_0523 0.85 -0.7 615,390 - Shewana3_0523 0.89 -0.3 615,403 + Shewana3_0523 0.90 +0.1 615,403 + Shewana3_0523 0.90 -3.5 615,411 - -0.2 615,439 + -0.3 615,573 - -0.3 615,590 + +0.0 615,639 + -0.4 615,746 + Shewana3_0524 0.11 +0.1 615,909 - Shewana3_0524 0.46 -0.2 615,936 + Shewana3_0524 0.51 -0.1 616,031 - Shewana3_0524 0.72 +0.4 616,092 + Shewana3_0524 0.84 +0.4 616,348 + Shewana3_0525 0.43 +0.3 616,369 - Shewana3_0525 0.49 -0.2 616,441 + Shewana3_0525 0.71 -0.1 616,449 - Shewana3_0525 0.73 -0.1
Or see this region's nucleotide sequence