Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0512 and Shewana3_0513 are separated by 148 nucleotides Shewana3_0513 and Shewana3_0514 are separated by 36 nucleotides Shewana3_0514 and Shewana3_0515 are separated by 164 nucleotides Shewana3_0515 and Shewana3_0516 are separated by 208 nucleotides
Shewana3_0512: Shewana3_0512 - peptidyl-tRNA hydrolase domain protein (RefSeq), at 602,761 to 603,174
_0512
Shewana3_0513: Shewana3_0513 - hypothetical protein (RefSeq), at 603,323 to 603,688
_0513
Shewana3_0514: Shewana3_0514 - hypothetical protein (RefSeq), at 603,725 to 603,928
_0514
Shewana3_0515: Shewana3_0515 - hypothetical protein (RefSeq), at 604,093 to 604,542
_0515
Shewana3_0516: Shewana3_0516 - outer membrane efflux family protein, putative (RefSeq), at 604,751 to 606,121
_0516
Position (kb) 603
604 Strain fitness (log2 ratio) -2
-1
0
1 at 602.768 kb on + strand at 602.768 kb on + strand at 602.776 kb on - strand at 602.821 kb on + strand, within Shewana3_0512 at 602.836 kb on + strand, within Shewana3_0512 at 602.931 kb on + strand, within Shewana3_0512 at 602.939 kb on - strand, within Shewana3_0512 at 603.200 kb on + strand at 603.212 kb on + strand at 603.213 kb on + strand at 603.318 kb on + strand at 603.603 kb on + strand, within Shewana3_0513 at 603.603 kb on + strand, within Shewana3_0513 at 603.611 kb on - strand, within Shewana3_0513 at 603.611 kb on - strand, within Shewana3_0513 at 603.611 kb on - strand, within Shewana3_0513 at 603.785 kb on + strand, within Shewana3_0514 at 603.803 kb on + strand, within Shewana3_0514 at 603.867 kb on - strand, within Shewana3_0514 at 604.053 kb on - strand at 604.273 kb on + strand, within Shewana3_0515 at 604.573 kb on - strand at 604.619 kb on + strand at 604.629 kb on + strand at 604.637 kb on - strand at 604.647 kb on + strand at 604.655 kb on - strand at 604.705 kb on + strand at 604.784 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 602,768 + +0.3 602,768 + +0.4 602,776 - +0.2 602,821 + Shewana3_0512 0.14 +0.2 602,836 + Shewana3_0512 0.18 -0.4 602,931 + Shewana3_0512 0.41 +0.1 602,939 - Shewana3_0512 0.43 -0.2 603,200 + +0.4 603,212 + +0.1 603,213 + +0.9 603,318 + -0.3 603,603 + Shewana3_0513 0.77 -0.1 603,603 + Shewana3_0513 0.77 +0.8 603,611 - Shewana3_0513 0.79 +0.3 603,611 - Shewana3_0513 0.79 -0.1 603,611 - Shewana3_0513 0.79 +0.8 603,785 + Shewana3_0514 0.29 +0.7 603,803 + Shewana3_0514 0.38 +0.6 603,867 - Shewana3_0514 0.70 -1.8 604,053 - -0.9 604,273 + Shewana3_0515 0.40 -2.1 604,573 - -0.5 604,619 + +0.4 604,629 + +0.4 604,637 - +0.6 604,647 + -0.7 604,655 - +0.2 604,705 + -0.0 604,784 + -0.0
Or see this region's nucleotide sequence