Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0482 and Shewana3_0483 are separated by 157 nucleotides Shewana3_0483 and Shewana3_0484 overlap by 4 nucleotides Shewana3_0484 and Shewana3_0485 are separated by 44 nucleotides Shewana3_0485 and Shewana3_0486 are separated by 255 nucleotides Shewana3_0486 and Shewana3_0487 are separated by 49 nucleotides
Shewana3_0482: Shewana3_0482 - peptidase S9 prolyl oligopeptidase (RefSeq), at 564,442 to 566,502
_0482
Shewana3_0483: Shewana3_0483 - hypothetical protein (RefSeq), at 566,660 to 567,178
_0483
Shewana3_0484: Shewana3_0484 - XRE family transcriptional regulator (RefSeq), at 567,175 to 567,408
_0484
Shewana3_0485: Shewana3_0485 - hypothetical protein (RefSeq), at 567,453 to 568,031
_0485
Shewana3_0486: Shewana3_0486 - redoxin domain-containing protein (RefSeq), at 568,287 to 568,871
_0486
Shewana3_0487: Shewana3_0487 - cytochrome C biogenesis protein (RefSeq), at 568,921 to 569,340
_0487
Position (kb) 567
568
569 Strain fitness (log2 ratio) -2
-1
0
1
2 at 566.470 kb on + strand at 566.632 kb on - strand at 566.642 kb on - strand at 567.130 kb on + strand at 567.243 kb on + strand, within Shewana3_0484 at 567.251 kb on - strand, within Shewana3_0484 at 567.251 kb on - strand, within Shewana3_0484 at 567.251 kb on - strand, within Shewana3_0484 at 567.297 kb on + strand, within Shewana3_0484 at 567.415 kb on + strand at 567.415 kb on + strand at 567.415 kb on + strand at 567.422 kb on + strand at 567.484 kb on + strand at 567.497 kb on - strand at 567.532 kb on - strand, within Shewana3_0485 at 567.735 kb on - strand, within Shewana3_0485 at 567.761 kb on - strand, within Shewana3_0485 at 568.423 kb on + strand, within Shewana3_0486 at 568.431 kb on - strand, within Shewana3_0486 at 568.480 kb on - strand, within Shewana3_0486 at 568.628 kb on + strand, within Shewana3_0486 at 568.658 kb on + strand, within Shewana3_0486 at 568.658 kb on + strand, within Shewana3_0486 at 568.666 kb on - strand, within Shewana3_0486 at 568.666 kb on - strand, within Shewana3_0486 at 568.666 kb on - strand, within Shewana3_0486 at 568.754 kb on + strand, within Shewana3_0486 at 568.803 kb on + strand, within Shewana3_0486 at 568.818 kb on + strand at 568.873 kb on + strand at 568.911 kb on + strand at 568.918 kb on + strand at 568.950 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 566,470 + +0.0 566,632 - +0.4 566,642 - +0.4 567,130 + +0.3 567,243 + Shewana3_0484 0.29 +0.3 567,251 - Shewana3_0484 0.32 +1.9 567,251 - Shewana3_0484 0.32 -2.6 567,251 - Shewana3_0484 0.32 -0.8 567,297 + Shewana3_0484 0.52 +0.3 567,415 + +0.1 567,415 + -0.3 567,415 + -0.2 567,422 + -2.4 567,484 + -2.1 567,497 - +0.6 567,532 - Shewana3_0485 0.14 +0.7 567,735 - Shewana3_0485 0.49 +0.4 567,761 - Shewana3_0485 0.53 +0.5 568,423 + Shewana3_0486 0.23 +0.5 568,431 - Shewana3_0486 0.25 -0.4 568,480 - Shewana3_0486 0.33 +0.3 568,628 + Shewana3_0486 0.58 +0.6 568,658 + Shewana3_0486 0.63 +0.3 568,658 + Shewana3_0486 0.63 +0.4 568,666 - Shewana3_0486 0.65 +1.2 568,666 - Shewana3_0486 0.65 -0.0 568,666 - Shewana3_0486 0.65 +0.2 568,754 + Shewana3_0486 0.80 -0.8 568,803 + Shewana3_0486 0.88 -0.1 568,818 + -1.1 568,873 + +0.3 568,911 + +0.7 568,918 + -0.6 568,950 - -0.7
Or see this region's nucleotide sequence