Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0480

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0479 and Shewana3_0480 are separated by 556 nucleotidesShewana3_0480 and Shewana3_0481 overlap by 10 nucleotides Shewana3_0479: Shewana3_0479 - response regulator receiver modulated metal dependent phosphohydrolase (RefSeq), at 556,165 to 557,217 _0479 Shewana3_0480: Shewana3_0480 - putative PAS/PAC sensor protein (RefSeq), at 557,774 to 562,834 _0480 Shewana3_0481: Shewana3_0481 - response regulator receiver protein (RefSeq), at 562,825 to 564,396 _0481 Position (kb) 557 558 559 560 561 562 563Strain fitness (log2 ratio) -2 -1 0 1at 556.801 kb on - strand, within Shewana3_0479at 556.803 kb on + strand, within Shewana3_0479at 556.842 kb on - strand, within Shewana3_0479at 557.009 kb on - strand, within Shewana3_0479at 557.066 kb on - strand, within Shewana3_0479at 557.066 kb on - strand, within Shewana3_0479at 557.068 kb on + strand, within Shewana3_0479at 557.078 kb on - strand, within Shewana3_0479at 557.328 kb on + strandat 557.404 kb on + strandat 557.721 kb on - strandat 557.856 kb on + strandat 557.883 kb on + strandat 558.229 kb on - strandat 558.233 kb on + strandat 558.241 kb on - strandat 558.243 kb on + strandat 558.417 kb on - strand, within Shewana3_0480at 558.475 kb on - strand, within Shewana3_0480at 558.632 kb on + strand, within Shewana3_0480at 558.840 kb on - strand, within Shewana3_0480at 559.374 kb on + strand, within Shewana3_0480at 559.374 kb on + strand, within Shewana3_0480at 559.374 kb on + strand, within Shewana3_0480at 559.374 kb on + strand, within Shewana3_0480at 559.382 kb on - strand, within Shewana3_0480at 559.382 kb on - strand, within Shewana3_0480at 559.384 kb on + strand, within Shewana3_0480at 559.384 kb on + strand, within Shewana3_0480at 559.384 kb on + strand, within Shewana3_0480at 559.384 kb on + strand, within Shewana3_0480at 559.384 kb on + strand, within Shewana3_0480at 559.392 kb on - strand, within Shewana3_0480at 559.392 kb on - strand, within Shewana3_0480at 559.392 kb on - strand, within Shewana3_0480at 559.392 kb on - strand, within Shewana3_0480at 559.404 kb on + strand, within Shewana3_0480at 559.573 kb on + strand, within Shewana3_0480at 559.623 kb on + strand, within Shewana3_0480at 559.623 kb on + strand, within Shewana3_0480at 559.631 kb on - strand, within Shewana3_0480at 559.763 kb on + strand, within Shewana3_0480at 559.866 kb on + strand, within Shewana3_0480at 559.874 kb on - strand, within Shewana3_0480at 560.093 kb on + strand, within Shewana3_0480at 560.101 kb on - strand, within Shewana3_0480at 560.195 kb on + strand, within Shewana3_0480at 560.295 kb on - strand, within Shewana3_0480at 560.381 kb on + strand, within Shewana3_0480at 560.383 kb on + strand, within Shewana3_0480at 560.519 kb on + strand, within Shewana3_0480at 560.524 kb on + strand, within Shewana3_0480at 560.546 kb on + strand, within Shewana3_0480at 560.549 kb on - strand, within Shewana3_0480at 560.570 kb on - strand, within Shewana3_0480at 560.579 kb on + strand, within Shewana3_0480at 560.678 kb on + strand, within Shewana3_0480at 560.747 kb on + strand, within Shewana3_0480at 560.762 kb on - strand, within Shewana3_0480at 560.983 kb on + strand, within Shewana3_0480at 561.113 kb on + strand, within Shewana3_0480at 561.230 kb on + strand, within Shewana3_0480at 561.238 kb on - strand, within Shewana3_0480at 561.271 kb on - strand, within Shewana3_0480at 561.401 kb on - strand, within Shewana3_0480at 561.477 kb on - strand, within Shewana3_0480at 561.616 kb on + strand, within Shewana3_0480at 561.624 kb on - strand, within Shewana3_0480at 561.633 kb on + strand, within Shewana3_0480at 561.633 kb on + strand, within Shewana3_0480at 561.771 kb on - strand, within Shewana3_0480at 561.844 kb on + strand, within Shewana3_0480at 562.099 kb on + strand, within Shewana3_0480at 562.105 kb on + strand, within Shewana3_0480at 562.105 kb on + strand, within Shewana3_0480at 562.147 kb on - strand, within Shewana3_0480at 562.160 kb on - strand, within Shewana3_0480at 562.160 kb on - strand, within Shewana3_0480at 562.162 kb on - strand, within Shewana3_0480at 562.216 kb on - strand, within Shewana3_0480at 562.329 kb on - strandat 562.336 kb on + strandat 562.392 kb on + strandat 562.392 kb on + strandat 562.400 kb on - strandat 562.400 kb on - strandat 562.667 kb on + strandat 562.716 kb on + strandat 562.724 kb on - strandat 562.756 kb on + strandat 562.780 kb on - strandat 562.791 kb on + strandat 562.799 kb on - strandat 562.845 kb on + strandat 562.875 kb on + strandat 562.889 kb on - strandat 562.992 kb on + strand, within Shewana3_0481at 563.000 kb on - strand, within Shewana3_0481at 563.072 kb on + strand, within Shewana3_0481at 563.160 kb on + strand, within Shewana3_0481at 563.168 kb on - strand, within Shewana3_0481at 563.183 kb on - strand, within Shewana3_0481at 563.190 kb on - strand, within Shewana3_0481at 563.192 kb on + strand, within Shewana3_0481at 563.365 kb on - strand, within Shewana3_0481at 563.445 kb on + strand, within Shewana3_0481at 563.649 kb on + strand, within Shewana3_0481at 563.793 kb on + strand, within Shewana3_0481

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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556,801 - Shewana3_0479 0.60 -0.1
556,803 + Shewana3_0479 0.61 -0.8
556,842 - Shewana3_0479 0.64 -2.4
557,009 - Shewana3_0479 0.80 +0.0
557,066 - Shewana3_0479 0.86 -1.9
557,066 - Shewana3_0479 0.86 -1.0
557,068 + Shewana3_0479 0.86 -1.2
557,078 - Shewana3_0479 0.87 -0.1
557,328 + +0.1
557,404 + -1.5
557,721 - +0.9
557,856 + +0.3
557,883 + +0.2
558,229 - -1.4
558,233 + -0.4
558,241 - +0.4
558,243 + -2.4
558,417 - Shewana3_0480 0.13 -0.4
558,475 - Shewana3_0480 0.14 -1.1
558,632 + Shewana3_0480 0.17 -0.1
558,840 - Shewana3_0480 0.21 -0.9
559,374 + Shewana3_0480 0.32 -0.4
559,374 + Shewana3_0480 0.32 +0.4
559,374 + Shewana3_0480 0.32 -0.8
559,374 + Shewana3_0480 0.32 +0.9
559,382 - Shewana3_0480 0.32 -0.8
559,382 - Shewana3_0480 0.32 -1.4
559,384 + Shewana3_0480 0.32 +0.2
559,384 + Shewana3_0480 0.32 -0.0
559,384 + Shewana3_0480 0.32 +0.4
559,384 + Shewana3_0480 0.32 +0.2
559,384 + Shewana3_0480 0.32 +0.7
559,392 - Shewana3_0480 0.32 -1.3
559,392 - Shewana3_0480 0.32 -0.2
559,392 - Shewana3_0480 0.32 -1.1
559,392 - Shewana3_0480 0.32 -0.2
559,404 + Shewana3_0480 0.32 +0.2
559,573 + Shewana3_0480 0.36 +0.9
559,623 + Shewana3_0480 0.37 +0.9
559,623 + Shewana3_0480 0.37 +0.5
559,631 - Shewana3_0480 0.37 -0.7
559,763 + Shewana3_0480 0.39 +0.1
559,866 + Shewana3_0480 0.41 +0.2
559,874 - Shewana3_0480 0.41 -0.4
560,093 + Shewana3_0480 0.46 +0.1
560,101 - Shewana3_0480 0.46 -1.2
560,195 + Shewana3_0480 0.48 +0.7
560,295 - Shewana3_0480 0.50 -0.1
560,381 + Shewana3_0480 0.52 +0.5
560,383 + Shewana3_0480 0.52 -0.0
560,519 + Shewana3_0480 0.54 -0.2
560,524 + Shewana3_0480 0.54 +0.4
560,546 + Shewana3_0480 0.55 +0.6
560,549 - Shewana3_0480 0.55 +0.6
560,570 - Shewana3_0480 0.55 +0.0
560,579 + Shewana3_0480 0.55 -0.4
560,678 + Shewana3_0480 0.57 +0.1
560,747 + Shewana3_0480 0.59 +0.4
560,762 - Shewana3_0480 0.59 -0.1
560,983 + Shewana3_0480 0.63 -0.6
561,113 + Shewana3_0480 0.66 +0.6
561,230 + Shewana3_0480 0.68 -0.2
561,238 - Shewana3_0480 0.68 +0.3
561,271 - Shewana3_0480 0.69 -1.2
561,401 - Shewana3_0480 0.72 -0.5
561,477 - Shewana3_0480 0.73 -0.3
561,616 + Shewana3_0480 0.76 -0.8
561,624 - Shewana3_0480 0.76 -0.3
561,633 + Shewana3_0480 0.76 +0.2
561,633 + Shewana3_0480 0.76 -0.1
561,771 - Shewana3_0480 0.79 -0.2
561,844 + Shewana3_0480 0.80 -0.2
562,099 + Shewana3_0480 0.85 +0.2
562,105 + Shewana3_0480 0.86 +0.8
562,105 + Shewana3_0480 0.86 -0.0
562,147 - Shewana3_0480 0.86 -2.3
562,160 - Shewana3_0480 0.87 -1.5
562,160 - Shewana3_0480 0.87 -2.5
562,162 - Shewana3_0480 0.87 -0.5
562,216 - Shewana3_0480 0.88 -0.6
562,329 - -0.4
562,336 + +0.6
562,392 + +0.4
562,392 + -0.3
562,400 - -1.5
562,400 - +0.6
562,667 + -0.2
562,716 + -1.3
562,724 - +0.3
562,756 + -0.0
562,780 - -0.1
562,791 + +0.2
562,799 - -0.5
562,845 + +0.1
562,875 + +0.4
562,889 - -0.1
562,992 + Shewana3_0481 0.11 +0.5
563,000 - Shewana3_0481 0.11 -0.1
563,072 + Shewana3_0481 0.16 +0.9
563,160 + Shewana3_0481 0.21 +0.7
563,168 - Shewana3_0481 0.22 -0.8
563,183 - Shewana3_0481 0.23 +1.0
563,190 - Shewana3_0481 0.23 +1.0
563,192 + Shewana3_0481 0.23 -0.2
563,365 - Shewana3_0481 0.34 -0.6
563,445 + Shewana3_0481 0.39 +0.0
563,649 + Shewana3_0481 0.52 +0.6
563,793 + Shewana3_0481 0.62 +0.4

Or see this region's nucleotide sequence