Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0477 and Shewana3_0478 overlap by 4 nucleotides Shewana3_0478 and Shewana3_0479 are separated by 66 nucleotides Shewana3_0479 and Shewana3_0480 are separated by 556 nucleotides
Shewana3_0477: Shewana3_0477 - hypothetical protein (RefSeq), at 554,705 to 555,811
_0477
Shewana3_0478: Shewana3_0478 - putative mitomycin resistance protein (RefSeq), at 555,808 to 556,098
_0478
Shewana3_0479: Shewana3_0479 - response regulator receiver modulated metal dependent phosphohydrolase (RefSeq), at 556,165 to 557,217
_0479
Shewana3_0480: Shewana3_0480 - putative PAS/PAC sensor protein (RefSeq), at 557,774 to 562,834
_0480
Position (kb) 556
557
558 Strain fitness (log2 ratio) -2
-1
0
1 at 555.283 kb on + strand, within Shewana3_0477 at 555.312 kb on + strand, within Shewana3_0477 at 555.410 kb on - strand, within Shewana3_0477 at 555.510 kb on - strand, within Shewana3_0477 at 555.568 kb on + strand, within Shewana3_0477 at 555.585 kb on + strand, within Shewana3_0477 at 555.756 kb on - strand at 555.783 kb on + strand at 555.790 kb on + strand at 555.806 kb on + strand at 555.806 kb on + strand at 555.857 kb on + strand, within Shewana3_0478 at 556.131 kb on + strand at 556.330 kb on - strand, within Shewana3_0479 at 556.335 kb on + strand, within Shewana3_0479 at 556.422 kb on + strand, within Shewana3_0479 at 556.801 kb on - strand, within Shewana3_0479 at 556.803 kb on + strand, within Shewana3_0479 at 556.842 kb on - strand, within Shewana3_0479 at 557.009 kb on - strand, within Shewana3_0479 at 557.066 kb on - strand, within Shewana3_0479 at 557.066 kb on - strand, within Shewana3_0479 at 557.068 kb on + strand, within Shewana3_0479 at 557.078 kb on - strand, within Shewana3_0479 at 557.328 kb on + strand at 557.404 kb on + strand at 557.721 kb on - strand at 557.856 kb on + strand at 557.883 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 555,283 + Shewana3_0477 0.52 +0.8 555,312 + Shewana3_0477 0.55 -0.2 555,410 - Shewana3_0477 0.64 +0.3 555,510 - Shewana3_0477 0.73 -1.6 555,568 + Shewana3_0477 0.78 +0.4 555,585 + Shewana3_0477 0.79 +0.7 555,756 - -0.1 555,783 + -0.5 555,790 + +1.0 555,806 + -0.1 555,806 + -0.9 555,857 + Shewana3_0478 0.17 +0.3 556,131 + +0.6 556,330 - Shewana3_0479 0.16 -0.0 556,335 + Shewana3_0479 0.16 +0.2 556,422 + Shewana3_0479 0.24 -0.9 556,801 - Shewana3_0479 0.60 -0.1 556,803 + Shewana3_0479 0.61 -0.8 556,842 - Shewana3_0479 0.64 -2.4 557,009 - Shewana3_0479 0.80 +0.0 557,066 - Shewana3_0479 0.86 -1.9 557,066 - Shewana3_0479 0.86 -1.0 557,068 + Shewana3_0479 0.86 -1.2 557,078 - Shewana3_0479 0.87 -0.1 557,328 + +0.1 557,404 + -1.5 557,721 - +0.9 557,856 + +0.3 557,883 + +0.2
Or see this region's nucleotide sequence