Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0472 and Shewana3_0473 are separated by 103 nucleotides Shewana3_0473 and Shewana3_0474 are separated by 373 nucleotides
Shewana3_0472: Shewana3_0472 - IS4 family transposase (RefSeq), at 548,466 to 550,079
_0472
Shewana3_0473: Shewana3_0473 - hypothetical protein (RefSeq), at 550,183 to 550,599
_0473
Shewana3_0474: Shewana3_0474 - 2-nitropropane dioxygenase, NPD (RefSeq), at 550,973 to 552,034
_0474
Position (kb) 550
551 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 550.175 kb on + strand at 550.288 kb on + strand, within Shewana3_0473 at 550.288 kb on + strand, within Shewana3_0473 at 550.288 kb on + strand, within Shewana3_0473 at 550.296 kb on - strand, within Shewana3_0473 at 550.349 kb on - strand, within Shewana3_0473 at 550.356 kb on - strand, within Shewana3_0473 at 550.391 kb on + strand, within Shewana3_0473 at 550.391 kb on + strand, within Shewana3_0473 at 550.399 kb on - strand, within Shewana3_0473 at 550.425 kb on - strand, within Shewana3_0473 at 550.433 kb on - strand, within Shewana3_0473 at 550.466 kb on - strand, within Shewana3_0473 at 550.470 kb on + strand, within Shewana3_0473 at 550.470 kb on + strand, within Shewana3_0473 at 550.470 kb on + strand, within Shewana3_0473 at 550.470 kb on + strand, within Shewana3_0473 at 550.471 kb on + strand, within Shewana3_0473 at 550.471 kb on + strand, within Shewana3_0473 at 550.471 kb on + strand, within Shewana3_0473 at 550.471 kb on + strand, within Shewana3_0473 at 550.479 kb on - strand, within Shewana3_0473 at 550.479 kb on - strand, within Shewana3_0473 at 550.479 kb on - strand, within Shewana3_0473 at 550.480 kb on + strand, within Shewana3_0473 at 550.489 kb on - strand, within Shewana3_0473 at 550.515 kb on + strand, within Shewana3_0473 at 550.536 kb on + strand, within Shewana3_0473 at 550.544 kb on - strand, within Shewana3_0473 at 550.554 kb on - strand, within Shewana3_0473 at 550.597 kb on + strand at 550.597 kb on + strand at 550.605 kb on - strand at 550.623 kb on + strand at 550.806 kb on - strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.819 kb on - strand at 550.819 kb on - strand at 550.819 kb on - strand at 550.819 kb on - strand at 550.826 kb on + strand at 550.826 kb on + strand at 550.847 kb on - strand at 550.976 kb on - strand at 550.976 kb on - strand at 551.044 kb on + strand at 551.049 kb on + strand at 551.049 kb on + strand at 551.057 kb on - strand at 551.108 kb on - strand, within Shewana3_0474 at 551.157 kb on + strand, within Shewana3_0474 at 551.299 kb on + strand, within Shewana3_0474 at 551.299 kb on + strand, within Shewana3_0474 at 551.306 kb on + strand, within Shewana3_0474 at 551.306 kb on + strand, within Shewana3_0474 at 551.306 kb on + strand, within Shewana3_0474 at 551.307 kb on - strand, within Shewana3_0474 at 551.314 kb on - strand, within Shewana3_0474 at 551.341 kb on + strand, within Shewana3_0474 at 551.460 kb on + strand, within Shewana3_0474
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 550,175 + -0.7 550,288 + Shewana3_0473 0.25 -1.7 550,288 + Shewana3_0473 0.25 +0.2 550,288 + Shewana3_0473 0.25 +0.4 550,296 - Shewana3_0473 0.27 +0.2 550,349 - Shewana3_0473 0.40 -2.0 550,356 - Shewana3_0473 0.41 -0.5 550,391 + Shewana3_0473 0.50 -0.6 550,391 + Shewana3_0473 0.50 -0.5 550,399 - Shewana3_0473 0.52 -0.1 550,425 - Shewana3_0473 0.58 -0.2 550,433 - Shewana3_0473 0.60 -1.0 550,466 - Shewana3_0473 0.68 -2.5 550,470 + Shewana3_0473 0.69 +0.1 550,470 + Shewana3_0473 0.69 -3.8 550,470 + Shewana3_0473 0.69 -0.8 550,470 + Shewana3_0473 0.69 -0.9 550,471 + Shewana3_0473 0.69 -1.1 550,471 + Shewana3_0473 0.69 -0.4 550,471 + Shewana3_0473 0.69 +0.1 550,471 + Shewana3_0473 0.69 -0.5 550,479 - Shewana3_0473 0.71 -2.7 550,479 - Shewana3_0473 0.71 -1.5 550,479 - Shewana3_0473 0.71 -0.8 550,480 + Shewana3_0473 0.71 +0.6 550,489 - Shewana3_0473 0.73 -0.6 550,515 + Shewana3_0473 0.80 -0.6 550,536 + Shewana3_0473 0.85 -0.7 550,544 - Shewana3_0473 0.87 -2.5 550,554 - Shewana3_0473 0.89 -1.8 550,597 + -0.4 550,597 + -0.2 550,605 - +0.4 550,623 + -2.2 550,806 - -1.5 550,811 + -2.3 550,811 + -0.2 550,811 + -0.3 550,811 + -0.9 550,811 + +1.9 550,811 + +0.5 550,811 + -0.7 550,811 + -0.9 550,811 + -1.0 550,811 + -1.0 550,819 - -0.5 550,819 - -0.1 550,819 - +1.9 550,819 - -0.7 550,826 + +0.2 550,826 + -0.6 550,847 - -0.9 550,976 - -1.2 550,976 - +0.7 551,044 + -0.9 551,049 + +0.2 551,049 + -0.0 551,057 - -0.9 551,108 - Shewana3_0474 0.13 -1.1 551,157 + Shewana3_0474 0.17 -0.6 551,299 + Shewana3_0474 0.31 -0.5 551,299 + Shewana3_0474 0.31 +0.4 551,306 + Shewana3_0474 0.31 -0.2 551,306 + Shewana3_0474 0.31 -0.1 551,306 + Shewana3_0474 0.31 +0.3 551,307 - Shewana3_0474 0.31 -0.9 551,314 - Shewana3_0474 0.32 -0.5 551,341 + Shewana3_0474 0.35 +0.1 551,460 + Shewana3_0474 0.46 +0.1
Or see this region's nucleotide sequence