Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0464 and Shewana3_0465 are separated by 655 nucleotides Shewana3_0465 and Shewana3_0466 are separated by 78 nucleotides
Shewana3_0464: Shewana3_0464 - hypothetical protein (RefSeq), at 538,433 to 538,771
_0464
Shewana3_0465: Shewana3_0465 - hypothetical protein (RefSeq), at 539,427 to 540,026
_0465
Shewana3_0466: Shewana3_0466 - no description, at 540,105 to 540,392
_0466
Position (kb) 539
540
541 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 538.505 kb on + strand, within Shewana3_0464 at 538.530 kb on + strand, within Shewana3_0464 at 538.530 kb on + strand, within Shewana3_0464 at 538.530 kb on + strand, within Shewana3_0464 at 538.530 kb on + strand, within Shewana3_0464 at 538.530 kb on + strand, within Shewana3_0464 at 538.538 kb on - strand, within Shewana3_0464 at 538.538 kb on - strand, within Shewana3_0464 at 538.538 kb on - strand, within Shewana3_0464 at 538.538 kb on - strand, within Shewana3_0464 at 538.538 kb on - strand, within Shewana3_0464 at 538.538 kb on - strand, within Shewana3_0464 at 538.572 kb on + strand, within Shewana3_0464 at 538.572 kb on - strand, within Shewana3_0464 at 538.578 kb on + strand, within Shewana3_0464 at 538.647 kb on + strand, within Shewana3_0464 at 538.807 kb on + strand at 538.863 kb on - strand at 538.978 kb on + strand at 538.995 kb on + strand at 539.043 kb on + strand at 539.043 kb on + strand at 539.043 kb on + strand at 539.043 kb on + strand at 539.043 kb on + strand at 539.044 kb on + strand at 539.052 kb on - strand at 539.052 kb on - strand at 539.119 kb on - strand at 539.318 kb on + strand at 539.416 kb on - strand at 539.437 kb on - strand at 539.438 kb on - strand at 539.440 kb on + strand at 539.440 kb on + strand at 539.464 kb on - strand at 539.497 kb on + strand, within Shewana3_0465 at 539.497 kb on + strand, within Shewana3_0465 at 539.505 kb on - strand, within Shewana3_0465 at 539.507 kb on + strand, within Shewana3_0465 at 539.616 kb on - strand, within Shewana3_0465 at 539.618 kb on + strand, within Shewana3_0465 at 539.640 kb on - strand, within Shewana3_0465 at 539.640 kb on - strand, within Shewana3_0465 at 539.640 kb on - strand, within Shewana3_0465 at 539.650 kb on + strand, within Shewana3_0465 at 539.652 kb on + strand, within Shewana3_0465 at 539.660 kb on - strand, within Shewana3_0465 at 539.676 kb on + strand, within Shewana3_0465 at 539.759 kb on - strand, within Shewana3_0465 at 539.805 kb on + strand, within Shewana3_0465 at 539.805 kb on + strand, within Shewana3_0465 at 539.813 kb on - strand, within Shewana3_0465 at 539.813 kb on - strand, within Shewana3_0465 at 539.838 kb on + strand, within Shewana3_0465 at 539.838 kb on + strand, within Shewana3_0465 at 539.846 kb on - strand, within Shewana3_0465 at 539.846 kb on - strand, within Shewana3_0465 at 539.847 kb on - strand, within Shewana3_0465 at 539.847 kb on - strand, within Shewana3_0465 at 539.927 kb on - strand, within Shewana3_0465 at 539.931 kb on + strand, within Shewana3_0465 at 539.944 kb on - strand, within Shewana3_0465 at 539.949 kb on - strand, within Shewana3_0465 at 539.949 kb on - strand, within Shewana3_0465 at 539.949 kb on - strand, within Shewana3_0465 at 539.972 kb on - strand at 539.972 kb on - strand at 540.024 kb on + strand at 540.024 kb on + strand at 540.129 kb on + strand at 540.158 kb on - strand, within Shewana3_0466 at 540.160 kb on + strand, within Shewana3_0466 at 540.378 kb on + strand at 540.705 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 538,505 + Shewana3_0464 0.21 -0.0 538,530 + Shewana3_0464 0.29 -1.2 538,530 + Shewana3_0464 0.29 -0.4 538,530 + Shewana3_0464 0.29 +0.9 538,530 + Shewana3_0464 0.29 -1.5 538,530 + Shewana3_0464 0.29 -0.8 538,538 - Shewana3_0464 0.31 +0.3 538,538 - Shewana3_0464 0.31 -1.0 538,538 - Shewana3_0464 0.31 -0.9 538,538 - Shewana3_0464 0.31 -1.6 538,538 - Shewana3_0464 0.31 -1.5 538,538 - Shewana3_0464 0.31 -0.5 538,572 + Shewana3_0464 0.41 -2.7 538,572 - Shewana3_0464 0.41 -0.0 538,578 + Shewana3_0464 0.43 -0.9 538,647 + Shewana3_0464 0.63 -0.6 538,807 + +0.3 538,863 - -1.6 538,978 + -0.2 538,995 + +0.3 539,043 + +0.4 539,043 + -0.1 539,043 + -0.4 539,043 + -0.3 539,043 + +0.6 539,044 + -0.7 539,052 - +0.1 539,052 - -1.2 539,119 - -0.8 539,318 + -0.1 539,416 - -0.0 539,437 - -0.1 539,438 - +0.3 539,440 + -0.5 539,440 + -0.1 539,464 - +0.3 539,497 + Shewana3_0465 0.12 -0.5 539,497 + Shewana3_0465 0.12 +0.3 539,505 - Shewana3_0465 0.13 -0.8 539,507 + Shewana3_0465 0.13 -0.5 539,616 - Shewana3_0465 0.32 -1.0 539,618 + Shewana3_0465 0.32 -1.4 539,640 - Shewana3_0465 0.35 +0.5 539,640 - Shewana3_0465 0.35 +0.1 539,640 - Shewana3_0465 0.35 +0.2 539,650 + Shewana3_0465 0.37 -3.1 539,652 + Shewana3_0465 0.38 -1.1 539,660 - Shewana3_0465 0.39 +0.1 539,676 + Shewana3_0465 0.41 -0.7 539,759 - Shewana3_0465 0.55 -0.4 539,805 + Shewana3_0465 0.63 -0.3 539,805 + Shewana3_0465 0.63 +0.3 539,813 - Shewana3_0465 0.64 -2.0 539,813 - Shewana3_0465 0.64 +0.5 539,838 + Shewana3_0465 0.69 -1.8 539,838 + Shewana3_0465 0.69 -0.8 539,846 - Shewana3_0465 0.70 -0.2 539,846 - Shewana3_0465 0.70 +0.3 539,847 - Shewana3_0465 0.70 -0.7 539,847 - Shewana3_0465 0.70 -0.3 539,927 - Shewana3_0465 0.83 -0.5 539,931 + Shewana3_0465 0.84 -1.7 539,944 - Shewana3_0465 0.86 -1.1 539,949 - Shewana3_0465 0.87 -2.8 539,949 - Shewana3_0465 0.87 -3.6 539,949 - Shewana3_0465 0.87 -0.2 539,972 - -1.1 539,972 - -1.6 540,024 + -0.4 540,024 + -0.7 540,129 + -1.3 540,158 - Shewana3_0466 0.18 +0.2 540,160 + Shewana3_0466 0.19 -0.5 540,378 + -0.2 540,705 + -1.2
Or see this region's nucleotide sequence