Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0443 and Shewana3_0444 are separated by 107 nucleotides Shewana3_0444 and Shewana3_0445 are separated by 346 nucleotides Shewana3_0445 and Shewana3_0446 are separated by 3 nucleotides Shewana3_0446 and Shewana3_0447 are separated by 6 nucleotides
Shewana3_0443: Shewana3_0443 - permease (RefSeq), at 518,198 to 519,691
_0443
Shewana3_0444: Shewana3_0444 - band 7 protein (RefSeq), at 519,799 to 520,686
_0444
Shewana3_0445: Shewana3_0445 - hypothetical protein (RefSeq), at 521,033 to 521,287
_0445
Shewana3_0446: Shewana3_0446 - hypothetical protein (RefSeq), at 521,291 to 521,581
_0446
Shewana3_0447: Shewana3_0447 - response regulator receiver protein (RefSeq), at 521,588 to 523,207
_0447
Position (kb) 519
520
521 Strain fitness (log2 ratio) -2
-1
0
1
2 at 518.862 kb on + strand, within Shewana3_0443 at 518.862 kb on + strand, within Shewana3_0443 at 518.911 kb on + strand, within Shewana3_0443 at 518.934 kb on - strand, within Shewana3_0443 at 518.954 kb on + strand, within Shewana3_0443 at 519.038 kb on - strand, within Shewana3_0443 at 519.088 kb on + strand, within Shewana3_0443 at 519.103 kb on + strand, within Shewana3_0443 at 519.233 kb on - strand, within Shewana3_0443 at 519.241 kb on + strand, within Shewana3_0443 at 519.251 kb on + strand, within Shewana3_0443 at 519.295 kb on + strand, within Shewana3_0443 at 519.305 kb on + strand, within Shewana3_0443 at 519.372 kb on + strand, within Shewana3_0443 at 519.420 kb on + strand, within Shewana3_0443 at 519.445 kb on + strand, within Shewana3_0443 at 519.457 kb on + strand, within Shewana3_0443 at 519.479 kb on + strand, within Shewana3_0443 at 519.479 kb on + strand, within Shewana3_0443 at 519.487 kb on - strand, within Shewana3_0443 at 519.679 kb on + strand at 519.745 kb on + strand at 519.859 kb on - strand at 519.980 kb on + strand, within Shewana3_0444 at 519.980 kb on + strand, within Shewana3_0444 at 520.111 kb on + strand, within Shewana3_0444 at 520.441 kb on + strand, within Shewana3_0444 at 521.000 kb on + strand at 521.159 kb on - strand, within Shewana3_0445 at 521.193 kb on + strand, within Shewana3_0445 at 521.253 kb on - strand, within Shewana3_0445 at 521.343 kb on - strand, within Shewana3_0446 at 521.369 kb on + strand, within Shewana3_0446 at 521.369 kb on + strand, within Shewana3_0446 at 521.375 kb on + strand, within Shewana3_0446 at 521.375 kb on + strand, within Shewana3_0446 at 521.377 kb on - strand, within Shewana3_0446 at 521.438 kb on - strand, within Shewana3_0446 at 521.571 kb on - strand at 521.627 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 518,862 + Shewana3_0443 0.44 +0.9 518,862 + Shewana3_0443 0.44 +0.5 518,911 + Shewana3_0443 0.48 +1.3 518,934 - Shewana3_0443 0.49 +0.3 518,954 + Shewana3_0443 0.51 +0.4 519,038 - Shewana3_0443 0.56 -0.2 519,088 + Shewana3_0443 0.60 +0.5 519,103 + Shewana3_0443 0.61 +0.2 519,233 - Shewana3_0443 0.69 +0.8 519,241 + Shewana3_0443 0.70 +0.2 519,251 + Shewana3_0443 0.70 -1.2 519,295 + Shewana3_0443 0.73 +0.7 519,305 + Shewana3_0443 0.74 +0.0 519,372 + Shewana3_0443 0.79 +0.6 519,420 + Shewana3_0443 0.82 +0.9 519,445 + Shewana3_0443 0.83 +0.0 519,457 + Shewana3_0443 0.84 +0.2 519,479 + Shewana3_0443 0.86 -2.4 519,479 + Shewana3_0443 0.86 -1.6 519,487 - Shewana3_0443 0.86 +1.8 519,679 + +0.2 519,745 + +1.0 519,859 - +0.2 519,980 + Shewana3_0444 0.20 -0.3 519,980 + Shewana3_0444 0.20 +0.1 520,111 + Shewana3_0444 0.35 -0.4 520,441 + Shewana3_0444 0.72 -1.2 521,000 + +0.8 521,159 - Shewana3_0445 0.49 -0.5 521,193 + Shewana3_0445 0.63 -0.6 521,253 - Shewana3_0445 0.86 +1.2 521,343 - Shewana3_0446 0.18 -0.7 521,369 + Shewana3_0446 0.27 -0.3 521,369 + Shewana3_0446 0.27 -0.1 521,375 + Shewana3_0446 0.29 +0.2 521,375 + Shewana3_0446 0.29 +0.3 521,377 - Shewana3_0446 0.30 -0.5 521,438 - Shewana3_0446 0.51 -1.3 521,571 - +0.4 521,627 + -0.2
Or see this region's nucleotide sequence