Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0379 and Shewana3_0380 are separated by 26 nucleotides Shewana3_0380 and Shewana3_0381 overlap by 4 nucleotides
Shewana3_0379: Shewana3_0379 - TolC family type I secretion outer membrane protein (RefSeq), at 420,327 to 421,742
_0379
Shewana3_0380: Shewana3_0380 - HlyD family type I secretion membrane fusion protein (RefSeq), at 421,769 to 423,151
_0380
Shewana3_0381: Shewana3_0381 - ABC transporter related (RefSeq), at 423,148 to 425,325
_0381
Position (kb) 421
422
423
424 Strain fitness (log2 ratio) -2
-1
0
1 at 421.273 kb on + strand, within Shewana3_0379 at 421.281 kb on - strand, within Shewana3_0379 at 421.302 kb on + strand, within Shewana3_0379 at 421.331 kb on + strand, within Shewana3_0379 at 421.492 kb on + strand, within Shewana3_0379 at 421.579 kb on + strand, within Shewana3_0379 at 421.711 kb on + strand at 421.737 kb on - strand at 421.800 kb on - strand at 421.920 kb on - strand, within Shewana3_0380 at 422.302 kb on - strand, within Shewana3_0380 at 422.360 kb on + strand, within Shewana3_0380 at 422.368 kb on - strand, within Shewana3_0380 at 422.385 kb on - strand, within Shewana3_0380 at 422.400 kb on - strand, within Shewana3_0380 at 422.495 kb on - strand, within Shewana3_0380 at 422.629 kb on - strand, within Shewana3_0380 at 422.985 kb on + strand, within Shewana3_0380 at 423.066 kb on - strand at 423.298 kb on + strand at 423.299 kb on + strand at 423.299 kb on + strand at 423.307 kb on - strand at 423.428 kb on - strand, within Shewana3_0381 at 423.485 kb on - strand, within Shewana3_0381 at 423.485 kb on - strand, within Shewana3_0381 at 423.615 kb on - strand, within Shewana3_0381 at 423.663 kb on + strand, within Shewana3_0381 at 423.677 kb on - strand, within Shewana3_0381 at 423.760 kb on - strand, within Shewana3_0381 at 423.788 kb on - strand, within Shewana3_0381 at 423.933 kb on - strand, within Shewana3_0381 at 423.943 kb on - strand, within Shewana3_0381 at 423.953 kb on - strand, within Shewana3_0381
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 421,273 + Shewana3_0379 0.67 -2.0 421,281 - Shewana3_0379 0.67 -0.7 421,302 + Shewana3_0379 0.69 -0.2 421,331 + Shewana3_0379 0.71 -0.8 421,492 + Shewana3_0379 0.82 -0.4 421,579 + Shewana3_0379 0.88 -0.7 421,711 + -1.3 421,737 - -0.1 421,800 - -0.4 421,920 - Shewana3_0380 0.11 -0.3 422,302 - Shewana3_0380 0.39 +0.2 422,360 + Shewana3_0380 0.43 -1.7 422,368 - Shewana3_0380 0.43 -0.1 422,385 - Shewana3_0380 0.45 +0.3 422,400 - Shewana3_0380 0.46 +0.1 422,495 - Shewana3_0380 0.52 +0.3 422,629 - Shewana3_0380 0.62 +0.1 422,985 + Shewana3_0380 0.88 +1.2 423,066 - -0.5 423,298 + -0.7 423,299 + -0.6 423,299 + +0.3 423,307 - -1.6 423,428 - Shewana3_0381 0.13 +1.1 423,485 - Shewana3_0381 0.15 -0.1 423,485 - Shewana3_0381 0.15 +0.1 423,615 - Shewana3_0381 0.21 -0.4 423,663 + Shewana3_0381 0.24 -1.6 423,677 - Shewana3_0381 0.24 -0.0 423,760 - Shewana3_0381 0.28 +0.1 423,788 - Shewana3_0381 0.29 -0.7 423,933 - Shewana3_0381 0.36 -0.3 423,943 - Shewana3_0381 0.37 -0.1 423,953 - Shewana3_0381 0.37 -0.5
Or see this region's nucleotide sequence