Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0363 and Shewana3_0364 are separated by 102 nucleotides Shewana3_0364 and Shewana3_0365 are separated by 92 nucleotides Shewana3_0365 and Shewana3_0366 are separated by 162 nucleotides Shewana3_0366 and Shewana3_0367 are separated by 236 nucleotides
Shewana3_0363: Shewana3_0363 - hypothetical protein (RefSeq), at 400,123 to 400,650
_0363
Shewana3_0364: Shewana3_0364 - phosphatidylglycerophosphatase (RefSeq), at 400,753 to 401,550
_0364
Shewana3_0365: Shewana3_0365 - hypothetical protein (RefSeq), at 401,643 to 403,118
_0365
Shewana3_0366: Shewana3_0366 - hypothetical protein (RefSeq), at 403,281 to 403,808
_0366
Shewana3_0367: Shewana3_0367 - hypothetical protein (RefSeq), at 404,045 to 405,211
_0367
Position (kb) 401
402
403
404 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 400.731 kb on - strand at 400.855 kb on - strand, within Shewana3_0364 at 400.971 kb on + strand, within Shewana3_0364 at 400.971 kb on + strand, within Shewana3_0364 at 401.116 kb on - strand, within Shewana3_0364 at 401.123 kb on + strand, within Shewana3_0364 at 401.354 kb on + strand, within Shewana3_0364 at 401.394 kb on - strand, within Shewana3_0364 at 401.520 kb on - strand at 401.521 kb on + strand at 401.553 kb on + strand at 401.566 kb on + strand at 401.643 kb on + strand at 401.643 kb on + strand at 401.643 kb on + strand at 401.645 kb on + strand at 401.663 kb on - strand at 401.721 kb on + strand at 401.760 kb on - strand at 401.760 kb on - strand at 401.928 kb on + strand, within Shewana3_0365 at 401.958 kb on + strand, within Shewana3_0365 at 401.966 kb on - strand, within Shewana3_0365 at 401.966 kb on - strand, within Shewana3_0365 at 401.978 kb on - strand, within Shewana3_0365 at 402.090 kb on - strand, within Shewana3_0365 at 402.090 kb on - strand, within Shewana3_0365 at 402.090 kb on - strand, within Shewana3_0365 at 402.107 kb on + strand, within Shewana3_0365 at 402.220 kb on + strand, within Shewana3_0365 at 402.228 kb on - strand, within Shewana3_0365 at 402.316 kb on - strand, within Shewana3_0365 at 402.377 kb on + strand, within Shewana3_0365 at 402.598 kb on + strand, within Shewana3_0365 at 402.777 kb on + strand, within Shewana3_0365 at 402.925 kb on + strand, within Shewana3_0365 at 402.933 kb on + strand, within Shewana3_0365 at 402.979 kb on + strand at 403.089 kb on + strand at 403.359 kb on - strand, within Shewana3_0366 at 403.394 kb on + strand, within Shewana3_0366 at 403.541 kb on + strand, within Shewana3_0366 at 403.572 kb on - strand, within Shewana3_0366 at 403.683 kb on + strand, within Shewana3_0366 at 403.717 kb on + strand, within Shewana3_0366 at 403.842 kb on - strand at 403.875 kb on + strand at 403.877 kb on - strand at 404.107 kb on - strand at 404.108 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 400,731 - +0.1 400,855 - Shewana3_0364 0.13 +0.2 400,971 + Shewana3_0364 0.27 +0.1 400,971 + Shewana3_0364 0.27 +0.2 401,116 - Shewana3_0364 0.45 +0.1 401,123 + Shewana3_0364 0.46 +0.4 401,354 + Shewana3_0364 0.75 -0.5 401,394 - Shewana3_0364 0.80 -0.0 401,520 - -2.8 401,521 + +1.1 401,553 + +0.7 401,566 + +0.2 401,643 + -0.3 401,643 + -0.8 401,643 + -0.7 401,645 + +0.2 401,663 - -0.2 401,721 + -0.1 401,760 - +0.4 401,760 - -3.1 401,928 + Shewana3_0365 0.19 +1.4 401,958 + Shewana3_0365 0.21 +0.3 401,966 - Shewana3_0365 0.22 -0.6 401,966 - Shewana3_0365 0.22 -0.3 401,978 - Shewana3_0365 0.23 -0.2 402,090 - Shewana3_0365 0.30 -1.3 402,090 - Shewana3_0365 0.30 +0.4 402,090 - Shewana3_0365 0.30 -1.1 402,107 + Shewana3_0365 0.31 +0.5 402,220 + Shewana3_0365 0.39 -0.6 402,228 - Shewana3_0365 0.40 +0.2 402,316 - Shewana3_0365 0.46 -2.2 402,377 + Shewana3_0365 0.50 -0.9 402,598 + Shewana3_0365 0.65 +0.6 402,777 + Shewana3_0365 0.77 -0.7 402,925 + Shewana3_0365 0.87 -0.6 402,933 + Shewana3_0365 0.87 -0.8 402,979 + -0.5 403,089 + -0.0 403,359 - Shewana3_0366 0.15 -0.2 403,394 + Shewana3_0366 0.21 -0.4 403,541 + Shewana3_0366 0.49 +0.0 403,572 - Shewana3_0366 0.55 -0.5 403,683 + Shewana3_0366 0.76 -0.1 403,717 + Shewana3_0366 0.83 +0.7 403,842 - -0.7 403,875 + +0.1 403,877 - -0.8 404,107 - -0.4 404,108 - -1.3
Or see this region's nucleotide sequence