Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0286 and Shewana3_0287 are separated by 303 nucleotides Shewana3_0287 and Shewana3_0288 are separated by 12 nucleotides Shewana3_0288 and Shewana3_0289 are separated by 21 nucleotides Shewana3_0289 and Shewana3_0290 are separated by 17 nucleotides
Shewana3_0286: Shewana3_0286 - TonB-dependent receptor (RefSeq), at 318,683 to 320,854
_0286
Shewana3_0287: Shewana3_0287 - hypothetical protein (RefSeq), at 321,158 to 321,349
_0287
Shewana3_0288: Shewana3_0288 - peptidase M23B (RefSeq), at 321,362 to 321,874
_0288
Shewana3_0289: Shewana3_0289 - hypothetical protein (RefSeq), at 321,896 to 322,477
_0289
Shewana3_0290: Shewana3_0290 - CHAP domain-containing protein (RefSeq), at 322,495 to 323,184
_0290
Position (kb) 321
322 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 320.415 kb on - strand, within Shewana3_0286 at 320.493 kb on + strand, within Shewana3_0286 at 320.493 kb on + strand, within Shewana3_0286 at 320.568 kb on + strand, within Shewana3_0286 at 320.793 kb on + strand at 320.859 kb on - strand at 320.878 kb on - strand at 320.898 kb on - strand at 321.113 kb on + strand at 321.306 kb on + strand, within Shewana3_0287 at 321.357 kb on + strand at 321.441 kb on + strand, within Shewana3_0288 at 321.444 kb on - strand, within Shewana3_0288 at 321.449 kb on - strand, within Shewana3_0288 at 321.456 kb on - strand, within Shewana3_0288 at 321.462 kb on + strand, within Shewana3_0288 at 321.468 kb on - strand, within Shewana3_0288 at 321.516 kb on + strand, within Shewana3_0288 at 321.526 kb on - strand, within Shewana3_0288 at 321.566 kb on - strand, within Shewana3_0288 at 321.653 kb on - strand, within Shewana3_0288 at 321.724 kb on + strand, within Shewana3_0288 at 321.873 kb on + strand at 321.885 kb on + strand at 321.885 kb on + strand at 321.893 kb on - strand at 321.975 kb on + strand, within Shewana3_0289 at 322.128 kb on + strand, within Shewana3_0289 at 322.185 kb on - strand, within Shewana3_0289 at 322.220 kb on + strand, within Shewana3_0289 at 322.362 kb on + strand, within Shewana3_0289 at 322.362 kb on + strand, within Shewana3_0289 at 322.372 kb on + strand, within Shewana3_0289 at 322.408 kb on + strand, within Shewana3_0289 at 322.418 kb on + strand, within Shewana3_0289 at 322.551 kb on + strand at 322.552 kb on - strand at 322.606 kb on - strand, within Shewana3_0290 at 322.638 kb on - strand, within Shewana3_0290 at 322.696 kb on - strand, within Shewana3_0290 at 322.835 kb on - strand, within Shewana3_0290
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 320,415 - Shewana3_0286 0.80 +1.2 320,493 + Shewana3_0286 0.83 -1.2 320,493 + Shewana3_0286 0.83 -2.9 320,568 + Shewana3_0286 0.87 -0.5 320,793 + -1.1 320,859 - -0.8 320,878 - -0.5 320,898 - -0.2 321,113 + +1.2 321,306 + Shewana3_0287 0.77 -0.2 321,357 + -0.4 321,441 + Shewana3_0288 0.15 -0.8 321,444 - Shewana3_0288 0.16 +0.2 321,449 - Shewana3_0288 0.17 -1.0 321,456 - Shewana3_0288 0.18 -1.8 321,462 + Shewana3_0288 0.19 +0.2 321,468 - Shewana3_0288 0.21 -1.0 321,516 + Shewana3_0288 0.30 -0.2 321,526 - Shewana3_0288 0.32 -0.5 321,566 - Shewana3_0288 0.40 -0.1 321,653 - Shewana3_0288 0.57 -0.3 321,724 + Shewana3_0288 0.71 -0.0 321,873 + -0.5 321,885 + -0.2 321,885 + -1.2 321,893 - -0.2 321,975 + Shewana3_0289 0.14 -1.5 322,128 + Shewana3_0289 0.40 +0.1 322,185 - Shewana3_0289 0.50 +0.6 322,220 + Shewana3_0289 0.56 -0.1 322,362 + Shewana3_0289 0.80 +0.2 322,362 + Shewana3_0289 0.80 +0.4 322,372 + Shewana3_0289 0.82 -1.2 322,408 + Shewana3_0289 0.88 -0.8 322,418 + Shewana3_0289 0.90 +0.7 322,551 + +0.5 322,552 - +0.2 322,606 - Shewana3_0290 0.16 -0.0 322,638 - Shewana3_0290 0.21 -0.5 322,696 - Shewana3_0290 0.29 -0.1 322,835 - Shewana3_0290 0.49 -0.8
Or see this region's nucleotide sequence