Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0252 and Shewana3_0253 are separated by 14 nucleotides Shewana3_0253 and Shewana3_0254 are separated by 302 nucleotides Shewana3_0254 and Shewana3_0255 are separated by 50 nucleotides
Shewana3_0252: Shewana3_0252 - ATPase domain-containing protein (RefSeq), at 283,974 to 285,323
_0252
Shewana3_0253: Shewana3_0253 - two component transcriptional regulator (RefSeq), at 285,338 to 286,024
_0253
Shewana3_0254: Shewana3_0254 - protein of unknown function, Spy-related (RefSeq), at 286,327 to 286,818
_0254
Shewana3_0255: Shewana3_0255 - cation diffusion facilitator family transporter (RefSeq), at 286,869 to 287,768
_0255
Position (kb) 285
286
287 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 284.813 kb on - strand, within Shewana3_0252 at 284.831 kb on + strand, within Shewana3_0252 at 284.831 kb on + strand, within Shewana3_0252 at 284.831 kb on + strand, within Shewana3_0252 at 284.835 kb on - strand, within Shewana3_0252 at 284.839 kb on - strand, within Shewana3_0252 at 284.839 kb on - strand, within Shewana3_0252 at 284.883 kb on - strand, within Shewana3_0252 at 285.008 kb on + strand, within Shewana3_0252 at 285.008 kb on + strand, within Shewana3_0252 at 285.016 kb on - strand, within Shewana3_0252 at 285.043 kb on + strand, within Shewana3_0252 at 285.051 kb on - strand, within Shewana3_0252 at 285.498 kb on - strand, within Shewana3_0253 at 285.794 kb on + strand, within Shewana3_0253 at 285.863 kb on + strand, within Shewana3_0253 at 285.907 kb on + strand, within Shewana3_0253 at 285.907 kb on + strand, within Shewana3_0253 at 285.907 kb on + strand, within Shewana3_0253 at 285.915 kb on - strand, within Shewana3_0253 at 285.915 kb on - strand, within Shewana3_0253 at 285.915 kb on - strand, within Shewana3_0253 at 285.915 kb on - strand, within Shewana3_0253 at 285.927 kb on + strand, within Shewana3_0253 at 285.943 kb on + strand, within Shewana3_0253 at 286.049 kb on + strand at 286.058 kb on + strand at 286.125 kb on + strand at 286.195 kb on - strand at 286.226 kb on - strand at 286.282 kb on - strand at 286.286 kb on + strand at 286.434 kb on + strand, within Shewana3_0254 at 286.676 kb on + strand, within Shewana3_0254 at 286.751 kb on + strand, within Shewana3_0254 at 286.751 kb on + strand, within Shewana3_0254 at 286.812 kb on + strand at 286.850 kb on - strand at 286.947 kb on - strand at 286.967 kb on + strand, within Shewana3_0255
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 284,813 - Shewana3_0252 0.62 +0.4 284,831 + Shewana3_0252 0.63 -0.1 284,831 + Shewana3_0252 0.63 -0.2 284,831 + Shewana3_0252 0.63 +0.5 284,835 - Shewana3_0252 0.64 -0.5 284,839 - Shewana3_0252 0.64 -0.3 284,839 - Shewana3_0252 0.64 +0.2 284,883 - Shewana3_0252 0.67 -0.5 285,008 + Shewana3_0252 0.77 +0.4 285,008 + Shewana3_0252 0.77 +0.1 285,016 - Shewana3_0252 0.77 -0.6 285,043 + Shewana3_0252 0.79 -0.7 285,051 - Shewana3_0252 0.80 -0.7 285,498 - Shewana3_0253 0.23 -0.9 285,794 + Shewana3_0253 0.66 +0.2 285,863 + Shewana3_0253 0.76 -3.4 285,907 + Shewana3_0253 0.83 -0.5 285,907 + Shewana3_0253 0.83 -0.6 285,907 + Shewana3_0253 0.83 -0.1 285,915 - Shewana3_0253 0.84 -1.6 285,915 - Shewana3_0253 0.84 +0.9 285,915 - Shewana3_0253 0.84 -2.1 285,915 - Shewana3_0253 0.84 -1.9 285,927 + Shewana3_0253 0.86 +0.1 285,943 + Shewana3_0253 0.88 -0.3 286,049 + +0.7 286,058 + -0.1 286,125 + -0.3 286,195 - -0.1 286,226 - -1.1 286,282 - -0.1 286,286 + +0.0 286,434 + Shewana3_0254 0.22 -0.6 286,676 + Shewana3_0254 0.71 +0.9 286,751 + Shewana3_0254 0.86 +0.6 286,751 + Shewana3_0254 0.86 +0.4 286,812 + -0.1 286,850 - +0.3 286,947 - -1.0 286,967 + Shewana3_0255 0.11 -0.3
Or see this region's nucleotide sequence