Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0161 and Shewana3_0162 are separated by 63 nucleotides Shewana3_0162 and Shewana3_0163 are separated by 105 nucleotides Shewana3_0163 and Shewana3_0164 overlap by 23 nucleotides
Shewana3_0161: Shewana3_0161 - type II secretion system protein N (RefSeq), at 184,805 to 185,566
_0161
Shewana3_0162: Shewana3_0162 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 185,630 to 186,292
_0162
Shewana3_0163: Shewana3_0163 - aspartyl/asparaginyl beta-hydroxylase (RefSeq), at 186,398 to 187,012
_0163
Shewana3_0164: Shewana3_0164 - phytanoyl-CoA dioxygenase (RefSeq), at 186,990 to 189,002
_0164
Position (kb) 186
187
188 Strain fitness (log2 ratio) -2
-1
0
1 at 185.490 kb on - strand at 185.529 kb on + strand at 185.890 kb on + strand, within Shewana3_0162 at 185.923 kb on + strand, within Shewana3_0162 at 185.937 kb on + strand, within Shewana3_0162 at 185.937 kb on + strand, within Shewana3_0162 at 185.945 kb on - strand, within Shewana3_0162 at 186.049 kb on - strand, within Shewana3_0162 at 186.122 kb on - strand, within Shewana3_0162 at 186.171 kb on - strand, within Shewana3_0162 at 186.171 kb on - strand, within Shewana3_0162 at 186.270 kb on - strand at 186.406 kb on + strand at 186.552 kb on - strand, within Shewana3_0163 at 186.563 kb on + strand, within Shewana3_0163 at 186.571 kb on - strand, within Shewana3_0163 at 186.578 kb on + strand, within Shewana3_0163 at 186.654 kb on + strand, within Shewana3_0163 at 186.764 kb on + strand, within Shewana3_0163 at 186.772 kb on - strand, within Shewana3_0163 at 186.777 kb on + strand, within Shewana3_0163 at 186.777 kb on + strand, within Shewana3_0163 at 186.785 kb on - strand, within Shewana3_0163 at 186.847 kb on + strand, within Shewana3_0163 at 187.012 kb on + strand at 187.047 kb on - strand at 187.078 kb on + strand at 187.078 kb on + strand at 187.180 kb on + strand at 187.250 kb on - strand, within Shewana3_0164 at 187.294 kb on - strand, within Shewana3_0164 at 187.428 kb on + strand, within Shewana3_0164 at 187.436 kb on - strand, within Shewana3_0164 at 187.436 kb on - strand, within Shewana3_0164 at 187.490 kb on + strand, within Shewana3_0164 at 187.527 kb on + strand, within Shewana3_0164 at 187.925 kb on - strand, within Shewana3_0164
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 185,490 - -0.5 185,529 + +0.0 185,890 + Shewana3_0162 0.39 +0.2 185,923 + Shewana3_0162 0.44 -0.4 185,937 + Shewana3_0162 0.46 +0.6 185,937 + Shewana3_0162 0.46 -0.7 185,945 - Shewana3_0162 0.48 +0.1 186,049 - Shewana3_0162 0.63 +0.7 186,122 - Shewana3_0162 0.74 -0.1 186,171 - Shewana3_0162 0.82 +0.2 186,171 - Shewana3_0162 0.82 +0.3 186,270 - -0.2 186,406 + -0.7 186,552 - Shewana3_0163 0.25 +0.3 186,563 + Shewana3_0163 0.27 -0.1 186,571 - Shewana3_0163 0.28 -0.4 186,578 + Shewana3_0163 0.29 -0.5 186,654 + Shewana3_0163 0.42 -0.4 186,764 + Shewana3_0163 0.60 +0.0 186,772 - Shewana3_0163 0.61 -0.6 186,777 + Shewana3_0163 0.62 -0.4 186,777 + Shewana3_0163 0.62 -0.4 186,785 - Shewana3_0163 0.63 -0.5 186,847 + Shewana3_0163 0.73 +0.1 187,012 + +0.0 187,047 - -1.3 187,078 + +0.4 187,078 + -0.1 187,180 + -0.8 187,250 - Shewana3_0164 0.13 -0.2 187,294 - Shewana3_0164 0.15 -0.0 187,428 + Shewana3_0164 0.22 -0.7 187,436 - Shewana3_0164 0.22 -1.8 187,436 - Shewana3_0164 0.22 -0.9 187,490 + Shewana3_0164 0.25 -0.2 187,527 + Shewana3_0164 0.27 -0.2 187,925 - Shewana3_0164 0.46 +0.2
Or see this region's nucleotide sequence