Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0145 and Shewana3_0146 are separated by 118 nucleotides Shewana3_0146 and Shewana3_0147 are separated by 247 nucleotides
Shewana3_0145: Shewana3_0145 - OmpA/MotB domain-containing protein (RefSeq), at 167,372 to 168,835
_0145
Shewana3_0146: Shewana3_0146 - AbgT putative transporter (RefSeq), at 168,954 to 170,513
_0146
Shewana3_0147: Shewana3_0147 - phosphoenolpyruvate carboxykinase (RefSeq), at 170,761 to 172,302
_0147
Position (kb) 168
169
170
171 Strain fitness (log2 ratio) -1
0
1 at 168.034 kb on - strand, within Shewana3_0145 at 168.048 kb on + strand, within Shewana3_0145 at 168.088 kb on + strand, within Shewana3_0145 at 168.096 kb on - strand, within Shewana3_0145 at 168.101 kb on - strand, within Shewana3_0145 at 168.243 kb on + strand, within Shewana3_0145 at 168.261 kb on - strand, within Shewana3_0145 at 168.276 kb on + strand, within Shewana3_0145 at 168.363 kb on + strand, within Shewana3_0145 at 168.371 kb on - strand, within Shewana3_0145 at 168.371 kb on - strand, within Shewana3_0145 at 168.371 kb on - strand, within Shewana3_0145 at 168.388 kb on + strand, within Shewana3_0145 at 168.424 kb on + strand, within Shewana3_0145 at 168.424 kb on + strand, within Shewana3_0145 at 168.479 kb on + strand, within Shewana3_0145 at 168.493 kb on - strand, within Shewana3_0145 at 168.532 kb on - strand, within Shewana3_0145 at 168.768 kb on + strand at 168.878 kb on + strand at 168.927 kb on - strand at 168.932 kb on - strand at 168.952 kb on + strand at 168.952 kb on + strand at 168.952 kb on + strand at 168.952 kb on + strand at 168.952 kb on + strand at 168.960 kb on - strand at 168.960 kb on - strand at 168.960 kb on - strand at 168.960 kb on - strand at 168.960 kb on - strand at 168.960 kb on - strand at 168.960 kb on - strand at 168.960 kb on - strand at 168.960 kb on - strand at 169.041 kb on - strand at 169.234 kb on - strand, within Shewana3_0146 at 169.313 kb on + strand, within Shewana3_0146 at 169.406 kb on + strand, within Shewana3_0146 at 169.413 kb on + strand, within Shewana3_0146 at 169.414 kb on - strand, within Shewana3_0146 at 169.539 kb on - strand, within Shewana3_0146 at 169.595 kb on - strand, within Shewana3_0146 at 169.595 kb on - strand, within Shewana3_0146 at 169.624 kb on + strand, within Shewana3_0146 at 169.941 kb on - strand, within Shewana3_0146 at 170.135 kb on - strand, within Shewana3_0146 at 170.180 kb on + strand, within Shewana3_0146 at 170.245 kb on - strand, within Shewana3_0146 at 170.888 kb on + strand at 170.945 kb on + strand, within Shewana3_0147 at 171.153 kb on - strand, within Shewana3_0147 at 171.153 kb on - strand, within Shewana3_0147 at 171.316 kb on - strand, within Shewana3_0147 at 171.343 kb on + strand, within Shewana3_0147 at 171.368 kb on - strand, within Shewana3_0147 at 171.441 kb on - strand, within Shewana3_0147 at 171.454 kb on + strand, within Shewana3_0147
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 168,034 - Shewana3_0145 0.45 -0.6 168,048 + Shewana3_0145 0.46 +1.0 168,088 + Shewana3_0145 0.49 +0.3 168,096 - Shewana3_0145 0.49 +0.8 168,101 - Shewana3_0145 0.50 -1.4 168,243 + Shewana3_0145 0.59 +0.1 168,261 - Shewana3_0145 0.61 -1.2 168,276 + Shewana3_0145 0.62 -0.1 168,363 + Shewana3_0145 0.68 +0.1 168,371 - Shewana3_0145 0.68 +0.7 168,371 - Shewana3_0145 0.68 -0.1 168,371 - Shewana3_0145 0.68 -0.3 168,388 + Shewana3_0145 0.69 +0.0 168,424 + Shewana3_0145 0.72 +0.3 168,424 + Shewana3_0145 0.72 -0.1 168,479 + Shewana3_0145 0.76 +0.5 168,493 - Shewana3_0145 0.77 -0.8 168,532 - Shewana3_0145 0.79 -0.2 168,768 + +0.2 168,878 + -0.1 168,927 - -0.4 168,932 - +0.1 168,952 + -0.7 168,952 + -0.8 168,952 + +0.6 168,952 + +0.1 168,952 + -0.8 168,960 - +0.0 168,960 - +0.3 168,960 - +0.7 168,960 - +0.2 168,960 - +0.1 168,960 - +0.2 168,960 - +0.3 168,960 - +0.4 168,960 - -0.6 169,041 - +0.4 169,234 - Shewana3_0146 0.18 +0.3 169,313 + Shewana3_0146 0.23 -0.3 169,406 + Shewana3_0146 0.29 -0.3 169,413 + Shewana3_0146 0.29 -0.8 169,414 - Shewana3_0146 0.29 +0.4 169,539 - Shewana3_0146 0.38 -0.1 169,595 - Shewana3_0146 0.41 -1.0 169,595 - Shewana3_0146 0.41 -1.5 169,624 + Shewana3_0146 0.43 -0.3 169,941 - Shewana3_0146 0.63 -0.3 170,135 - Shewana3_0146 0.76 +0.1 170,180 + Shewana3_0146 0.79 -1.5 170,245 - Shewana3_0146 0.83 -0.3 170,888 + +0.6 170,945 + Shewana3_0147 0.12 -0.4 171,153 - Shewana3_0147 0.25 +0.4 171,153 - Shewana3_0147 0.25 +0.1 171,316 - Shewana3_0147 0.36 -0.1 171,343 + Shewana3_0147 0.38 -0.9 171,368 - Shewana3_0147 0.39 +0.1 171,441 - Shewana3_0147 0.44 +0.6 171,454 + Shewana3_0147 0.45 -0.7
Or see this region's nucleotide sequence