Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0135 and Shewana3_0136 are separated by 22 nucleotides Shewana3_0136 and Shewana3_0137 are separated by 318 nucleotides Shewana3_0137 and Shewana3_0138 are separated by 647 nucleotides
Shewana3_0135: Shewana3_0135 - oligopeptidase B (RefSeq), at 153,400 to 155,535
_0135
Shewana3_0136: Shewana3_0136 - excinuclease ABC subunit C (RefSeq), at 155,558 to 155,980
_0136
Shewana3_0137: Shewana3_0137 - hypothetical protein (RefSeq), at 156,299 to 157,129
_0137
Shewana3_0138: Shewana3_0138 - putative lipoprotein (RefSeq), at 157,777 to 158,553
_0138
Position (kb)
156
157
158 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 155.350 kb on - strand at 155.507 kb on + strand at 155.515 kb on - strand at 155.761 kb on + strand, within Shewana3_0136 at 155.761 kb on + strand, within Shewana3_0136 at 155.769 kb on - strand, within Shewana3_0136 at 155.769 kb on - strand, within Shewana3_0136 at 155.796 kb on + strand, within Shewana3_0136 at 155.829 kb on - strand, within Shewana3_0136 at 155.908 kb on - strand, within Shewana3_0136 at 156.069 kb on + strand at 156.126 kb on - strand at 156.316 kb on - strand at 156.600 kb on + strand, within Shewana3_0137 at 156.600 kb on + strand, within Shewana3_0137 at 156.618 kb on + strand, within Shewana3_0137 at 156.618 kb on + strand, within Shewana3_0137 at 156.633 kb on - strand, within Shewana3_0137 at 156.744 kb on + strand, within Shewana3_0137 at 156.761 kb on - strand, within Shewana3_0137 at 156.851 kb on - strand, within Shewana3_0137 at 156.969 kb on - strand, within Shewana3_0137 at 157.123 kb on + strand at 157.149 kb on + strand at 157.241 kb on + strand at 157.459 kb on + strand at 157.512 kb on + strand at 157.697 kb on - strand at 157.697 kb on - strand at 157.752 kb on + strand at 157.782 kb on - strand at 157.844 kb on + strand at 157.852 kb on - strand at 157.856 kb on + strand, within Shewana3_0138
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 155,350 - +0.3 155,507 + +0.7 155,515 - -0.3 155,761 + Shewana3_0136 0.48 -0.4 155,761 + Shewana3_0136 0.48 +0.7 155,769 - Shewana3_0136 0.50 +0.1 155,769 - Shewana3_0136 0.50 -0.4 155,796 + Shewana3_0136 0.56 -1.2 155,829 - Shewana3_0136 0.64 -0.1 155,908 - Shewana3_0136 0.83 +0.2 156,069 + -0.1 156,126 - -3.6 156,316 - -0.0 156,600 + Shewana3_0137 0.36 -1.2 156,600 + Shewana3_0137 0.36 -1.0 156,618 + Shewana3_0137 0.38 -0.6 156,618 + Shewana3_0137 0.38 +0.0 156,633 - Shewana3_0137 0.40 -1.2 156,744 + Shewana3_0137 0.54 -0.4 156,761 - Shewana3_0137 0.56 -0.2 156,851 - Shewana3_0137 0.66 -0.9 156,969 - Shewana3_0137 0.81 -0.5 157,123 + -0.2 157,149 + -0.4 157,241 + +0.1 157,459 + -0.2 157,512 + +0.4 157,697 - -1.0 157,697 - -1.3 157,752 + -0.0 157,782 - -0.7 157,844 + -0.1 157,852 - -0.2 157,856 + Shewana3_0138 0.10 -1.0
Or see this region's nucleotide sequence