Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0137

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0135 and Shewana3_0136 are separated by 22 nucleotidesShewana3_0136 and Shewana3_0137 are separated by 318 nucleotidesShewana3_0137 and Shewana3_0138 are separated by 647 nucleotides Shewana3_0135: Shewana3_0135 - oligopeptidase B (RefSeq), at 153,400 to 155,535 _0135 Shewana3_0136: Shewana3_0136 - excinuclease ABC subunit C (RefSeq), at 155,558 to 155,980 _0136 Shewana3_0137: Shewana3_0137 - hypothetical protein (RefSeq), at 156,299 to 157,129 _0137 Shewana3_0138: Shewana3_0138 - putative lipoprotein (RefSeq), at 157,777 to 158,553 _0138 Position (kb) 156 157 158Strain fitness (log2 ratio) -3 -2 -1 0 1at 155.350 kb on - strandat 155.507 kb on + strandat 155.515 kb on - strandat 155.761 kb on + strand, within Shewana3_0136at 155.761 kb on + strand, within Shewana3_0136at 155.769 kb on - strand, within Shewana3_0136at 155.769 kb on - strand, within Shewana3_0136at 155.796 kb on + strand, within Shewana3_0136at 155.829 kb on - strand, within Shewana3_0136at 155.908 kb on - strand, within Shewana3_0136at 156.069 kb on + strandat 156.126 kb on - strandat 156.316 kb on - strandat 156.600 kb on + strand, within Shewana3_0137at 156.600 kb on + strand, within Shewana3_0137at 156.618 kb on + strand, within Shewana3_0137at 156.618 kb on + strand, within Shewana3_0137at 156.633 kb on - strand, within Shewana3_0137at 156.744 kb on + strand, within Shewana3_0137at 156.761 kb on - strand, within Shewana3_0137at 156.851 kb on - strand, within Shewana3_0137at 156.969 kb on - strand, within Shewana3_0137at 157.123 kb on + strandat 157.149 kb on + strandat 157.241 kb on + strandat 157.459 kb on + strandat 157.512 kb on + strandat 157.697 kb on - strandat 157.697 kb on - strandat 157.752 kb on + strandat 157.782 kb on - strandat 157.844 kb on + strandat 157.852 kb on - strandat 157.856 kb on + strand, within Shewana3_0138

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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155,350 - +0.3
155,507 + +0.7
155,515 - -0.3
155,761 + Shewana3_0136 0.48 -0.4
155,761 + Shewana3_0136 0.48 +0.7
155,769 - Shewana3_0136 0.50 +0.1
155,769 - Shewana3_0136 0.50 -0.4
155,796 + Shewana3_0136 0.56 -1.2
155,829 - Shewana3_0136 0.64 -0.1
155,908 - Shewana3_0136 0.83 +0.2
156,069 + -0.1
156,126 - -3.6
156,316 - -0.0
156,600 + Shewana3_0137 0.36 -1.2
156,600 + Shewana3_0137 0.36 -1.0
156,618 + Shewana3_0137 0.38 -0.6
156,618 + Shewana3_0137 0.38 +0.0
156,633 - Shewana3_0137 0.40 -1.2
156,744 + Shewana3_0137 0.54 -0.4
156,761 - Shewana3_0137 0.56 -0.2
156,851 - Shewana3_0137 0.66 -0.9
156,969 - Shewana3_0137 0.81 -0.5
157,123 + -0.2
157,149 + -0.4
157,241 + +0.1
157,459 + -0.2
157,512 + +0.4
157,697 - -1.0
157,697 - -1.3
157,752 + -0.0
157,782 - -0.7
157,844 + -0.1
157,852 - -0.2
157,856 + Shewana3_0138 0.10 -1.0

Or see this region's nucleotide sequence