Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0111

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0109 and Shewana3_0110 overlap by 1 nucleotidesShewana3_0110 and Shewana3_0111 are separated by 65 nucleotidesShewana3_0111 and Shewana3_0112 are separated by 117 nucleotides Shewana3_0109: Shewana3_0109 - putative inner membrane protein (RefSeq), at 125,630 to 126,844 _0109 Shewana3_0110: Shewana3_0110 - hypothetical protein (RefSeq), at 126,844 to 127,077 _0110 Shewana3_0111: Shewana3_0111 - peptidase M48, Ste24p (RefSeq), at 127,143 to 128,486 _0111 Shewana3_0112: Shewana3_0112 - hypothetical protein (RefSeq), at 128,604 to 129,218 _0112 Position (kb) 127 128 129Strain fitness (log2 ratio) -1 0 1at 126.245 kb on + strand, within Shewana3_0109at 126.299 kb on + strand, within Shewana3_0109at 126.300 kb on - strand, within Shewana3_0109at 126.312 kb on - strand, within Shewana3_0109at 126.358 kb on - strand, within Shewana3_0109at 126.590 kb on + strand, within Shewana3_0109at 126.608 kb on + strand, within Shewana3_0109at 126.627 kb on + strand, within Shewana3_0109at 126.698 kb on - strand, within Shewana3_0109at 126.698 kb on - strand, within Shewana3_0109at 126.888 kb on + strand, within Shewana3_0110at 126.895 kb on - strand, within Shewana3_0110at 126.915 kb on + strand, within Shewana3_0110at 127.244 kb on + strandat 127.264 kb on + strandat 127.310 kb on + strand, within Shewana3_0111at 127.310 kb on + strand, within Shewana3_0111at 127.318 kb on - strand, within Shewana3_0111at 127.318 kb on - strand, within Shewana3_0111at 127.349 kb on + strand, within Shewana3_0111at 127.349 kb on + strand, within Shewana3_0111at 127.357 kb on - strand, within Shewana3_0111at 127.377 kb on - strand, within Shewana3_0111at 127.389 kb on - strand, within Shewana3_0111at 127.666 kb on - strand, within Shewana3_0111at 127.721 kb on + strand, within Shewana3_0111at 127.756 kb on - strand, within Shewana3_0111at 127.767 kb on - strand, within Shewana3_0111at 127.807 kb on - strand, within Shewana3_0111at 127.855 kb on - strand, within Shewana3_0111at 127.892 kb on - strand, within Shewana3_0111at 127.947 kb on + strand, within Shewana3_0111at 127.947 kb on + strand, within Shewana3_0111at 127.947 kb on + strand, within Shewana3_0111at 127.947 kb on + strand, within Shewana3_0111at 127.986 kb on + strand, within Shewana3_0111at 127.986 kb on + strand, within Shewana3_0111at 128.041 kb on - strand, within Shewana3_0111at 128.041 kb on - strand, within Shewana3_0111at 128.097 kb on + strand, within Shewana3_0111at 128.105 kb on - strand, within Shewana3_0111at 128.110 kb on - strand, within Shewana3_0111at 128.379 kb on - strandat 128.609 kb on - strandat 128.769 kb on - strand, within Shewana3_0112at 128.785 kb on + strand, within Shewana3_0112at 128.807 kb on - strand, within Shewana3_0112at 128.836 kb on + strand, within Shewana3_0112at 128.836 kb on + strand, within Shewana3_0112at 128.844 kb on - strand, within Shewana3_0112at 128.857 kb on + strand, within Shewana3_0112at 128.873 kb on - strand, within Shewana3_0112at 128.970 kb on + strand, within Shewana3_0112at 128.994 kb on + strand, within Shewana3_0112at 129.029 kb on + strand, within Shewana3_0112at 129.040 kb on + strand, within Shewana3_0112at 129.141 kb on - strand, within Shewana3_0112at 129.190 kb on + strandat 129.235 kb on + strandat 129.343 kb on + strandat 129.420 kb on - strandat 129.420 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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126,245 + Shewana3_0109 0.51 +0.1
126,299 + Shewana3_0109 0.55 +0.6
126,300 - Shewana3_0109 0.55 -0.4
126,312 - Shewana3_0109 0.56 -0.7
126,358 - Shewana3_0109 0.60 -0.4
126,590 + Shewana3_0109 0.79 +0.1
126,608 + Shewana3_0109 0.80 +0.4
126,627 + Shewana3_0109 0.82 +0.0
126,698 - Shewana3_0109 0.88 -1.1
126,698 - Shewana3_0109 0.88 -0.8
126,888 + Shewana3_0110 0.19 +0.8
126,895 - Shewana3_0110 0.22 -0.5
126,915 + Shewana3_0110 0.30 +0.3
127,244 + -0.5
127,264 + -1.4
127,310 + Shewana3_0111 0.12 -0.0
127,310 + Shewana3_0111 0.12 -0.1
127,318 - Shewana3_0111 0.13 +0.2
127,318 - Shewana3_0111 0.13 +0.5
127,349 + Shewana3_0111 0.15 +1.0
127,349 + Shewana3_0111 0.15 -0.1
127,357 - Shewana3_0111 0.16 +0.5
127,377 - Shewana3_0111 0.17 +0.4
127,389 - Shewana3_0111 0.18 +0.3
127,666 - Shewana3_0111 0.39 +0.3
127,721 + Shewana3_0111 0.43 -1.1
127,756 - Shewana3_0111 0.46 +0.8
127,767 - Shewana3_0111 0.46 +0.1
127,807 - Shewana3_0111 0.49 -0.0
127,855 - Shewana3_0111 0.53 +1.0
127,892 - Shewana3_0111 0.56 +0.1
127,947 + Shewana3_0111 0.60 -1.0
127,947 + Shewana3_0111 0.60 -0.3
127,947 + Shewana3_0111 0.60 +0.1
127,947 + Shewana3_0111 0.60 +0.2
127,986 + Shewana3_0111 0.63 -1.2
127,986 + Shewana3_0111 0.63 -1.7
128,041 - Shewana3_0111 0.67 -0.1
128,041 - Shewana3_0111 0.67 +0.2
128,097 + Shewana3_0111 0.71 -0.4
128,105 - Shewana3_0111 0.72 +0.6
128,110 - Shewana3_0111 0.72 +0.3
128,379 - -1.2
128,609 - +0.2
128,769 - Shewana3_0112 0.27 -0.5
128,785 + Shewana3_0112 0.29 +0.1
128,807 - Shewana3_0112 0.33 -0.7
128,836 + Shewana3_0112 0.38 -0.4
128,836 + Shewana3_0112 0.38 -0.4
128,844 - Shewana3_0112 0.39 -0.4
128,857 + Shewana3_0112 0.41 +0.3
128,873 - Shewana3_0112 0.44 +0.4
128,970 + Shewana3_0112 0.60 +0.4
128,994 + Shewana3_0112 0.63 +0.3
129,029 + Shewana3_0112 0.69 +0.3
129,040 + Shewana3_0112 0.71 +0.3
129,141 - Shewana3_0112 0.87 -0.2
129,190 + +1.3
129,235 + -0.2
129,343 + +0.3
129,420 - -0.5
129,420 - -0.5

Or see this region's nucleotide sequence