Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0107 and Shewana3_R0005 overlap by 125 nucleotides Shewana3_R0005 and Shewana3_0108 are separated by 141 nucleotides Shewana3_0108 and Shewana3_0109 are separated by 124 nucleotides
Shewana3_0107: Shewana3_0107 - selenocysteine-specific translation elongation factor SelB (RefSeq), at 122,540 to 124,561
_0107
Shewana3_R0005: Shewana3_R0005 - tRNA-Sec (RefSeq), at 124,437 to 124,527
_R0005
Shewana3_0108: Shewana3_0108 - formate dehydrogenase accessory protein (RefSeq), at 124,669 to 125,505
_0108
Shewana3_0109: Shewana3_0109 - putative inner membrane protein (RefSeq), at 125,630 to 126,844
_0109
Position (kb) 124
125
126 Strain fitness (log2 ratio) -2
-1
0
1 at 123.794 kb on + strand, within Shewana3_0107 at 123.874 kb on - strand, within Shewana3_0107 at 123.934 kb on - strand, within Shewana3_0107 at 123.963 kb on - strand, within Shewana3_0107 at 124.105 kb on - strand, within Shewana3_0107 at 124.172 kb on + strand, within Shewana3_0107 at 124.241 kb on + strand, within Shewana3_0107 at 124.268 kb on - strand, within Shewana3_0107 at 124.326 kb on + strand, within Shewana3_0107 at 124.366 kb on - strand at 124.441 kb on + strand at 124.460 kb on + strand at 124.460 kb on + strand at 124.460 kb on + strand at 124.468 kb on - strand at 124.468 kb on - strand at 124.468 kb on - strand at 124.716 kb on - strand at 124.723 kb on - strand at 124.794 kb on + strand, within Shewana3_0108 at 124.810 kb on - strand, within Shewana3_0108 at 125.047 kb on + strand, within Shewana3_0108 at 125.097 kb on + strand, within Shewana3_0108 at 125.102 kb on + strand, within Shewana3_0108 at 125.102 kb on + strand, within Shewana3_0108 at 125.110 kb on - strand, within Shewana3_0108 at 125.110 kb on - strand, within Shewana3_0108 at 125.110 kb on - strand, within Shewana3_0108 at 125.112 kb on + strand, within Shewana3_0108 at 125.140 kb on - strand, within Shewana3_0108 at 125.140 kb on - strand, within Shewana3_0108 at 125.256 kb on + strand, within Shewana3_0108 at 125.289 kb on - strand, within Shewana3_0108 at 125.289 kb on - strand, within Shewana3_0108 at 125.314 kb on + strand, within Shewana3_0108 at 125.707 kb on + strand at 125.731 kb on + strand at 125.852 kb on + strand, within Shewana3_0109 at 125.852 kb on + strand, within Shewana3_0109 at 125.852 kb on + strand, within Shewana3_0109 at 125.852 kb on + strand, within Shewana3_0109 at 125.860 kb on - strand, within Shewana3_0109 at 125.860 kb on - strand, within Shewana3_0109 at 125.945 kb on + strand, within Shewana3_0109 at 125.953 kb on - strand, within Shewana3_0109 at 125.960 kb on - strand, within Shewana3_0109 at 126.035 kb on + strand, within Shewana3_0109 at 126.131 kb on - strand, within Shewana3_0109 at 126.245 kb on + strand, within Shewana3_0109 at 126.299 kb on + strand, within Shewana3_0109 at 126.300 kb on - strand, within Shewana3_0109 at 126.312 kb on - strand, within Shewana3_0109 at 126.358 kb on - strand, within Shewana3_0109
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 123,794 + Shewana3_0107 0.62 -0.2 123,874 - Shewana3_0107 0.66 +0.2 123,934 - Shewana3_0107 0.69 +0.1 123,963 - Shewana3_0107 0.70 +0.2 124,105 - Shewana3_0107 0.77 +0.6 124,172 + Shewana3_0107 0.81 -0.3 124,241 + Shewana3_0107 0.84 -0.6 124,268 - Shewana3_0107 0.85 -0.0 124,326 + Shewana3_0107 0.88 +0.3 124,366 - +0.2 124,441 + -0.3 124,460 + -0.0 124,460 + +0.1 124,460 + -0.7 124,468 - -0.2 124,468 - +0.3 124,468 - +0.0 124,716 - -1.3 124,723 - -0.7 124,794 + Shewana3_0108 0.15 +0.9 124,810 - Shewana3_0108 0.17 -0.8 125,047 + Shewana3_0108 0.45 -0.6 125,097 + Shewana3_0108 0.51 -0.5 125,102 + Shewana3_0108 0.52 -0.2 125,102 + Shewana3_0108 0.52 +0.0 125,110 - Shewana3_0108 0.53 -0.3 125,110 - Shewana3_0108 0.53 -0.1 125,110 - Shewana3_0108 0.53 -0.9 125,112 + Shewana3_0108 0.53 -0.3 125,140 - Shewana3_0108 0.56 -0.8 125,140 - Shewana3_0108 0.56 -0.7 125,256 + Shewana3_0108 0.70 -0.3 125,289 - Shewana3_0108 0.74 -0.1 125,289 - Shewana3_0108 0.74 -1.2 125,314 + Shewana3_0108 0.77 -0.7 125,707 + -0.3 125,731 + +0.5 125,852 + Shewana3_0109 0.18 +0.5 125,852 + Shewana3_0109 0.18 -1.8 125,852 + Shewana3_0109 0.18 +0.0 125,852 + Shewana3_0109 0.18 -0.5 125,860 - Shewana3_0109 0.19 -0.2 125,860 - Shewana3_0109 0.19 -1.4 125,945 + Shewana3_0109 0.26 +0.5 125,953 - Shewana3_0109 0.27 -0.3 125,960 - Shewana3_0109 0.27 -1.0 126,035 + Shewana3_0109 0.33 +0.2 126,131 - Shewana3_0109 0.41 -0.4 126,245 + Shewana3_0109 0.51 +0.1 126,299 + Shewana3_0109 0.55 +0.6 126,300 - Shewana3_0109 0.55 -0.4 126,312 - Shewana3_0109 0.56 -0.7 126,358 - Shewana3_0109 0.60 -0.4
Or see this region's nucleotide sequence