Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0081 and Shewana3_0082 are separated by 107 nucleotides Shewana3_0082 and Shewana3_0083 are separated by 118 nucleotides Shewana3_0083 and Shewana3_0084 are separated by 20 nucleotides
Shewana3_0081: Shewana3_0081 - MORN repeat-containing protein (RefSeq), at 94,414 to 96,903
_0081
Shewana3_0082: Shewana3_0082 - thioesterase superfamily protein (RefSeq), at 97,011 to 97,421
_0082
Shewana3_0083: Shewana3_0083 - HPP family protein (RefSeq), at 97,540 to 98,088
_0083
Shewana3_0084: Shewana3_0084 - hypothetical protein (RefSeq), at 98,109 to 98,372
_0084
Position (kb) 97
98 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 96.046 kb on - strand, within Shewana3_0081 at 96.056 kb on - strand, within Shewana3_0081 at 96.080 kb on - strand, within Shewana3_0081 at 96.095 kb on - strand, within Shewana3_0081 at 96.188 kb on + strand, within Shewana3_0081 at 96.214 kb on + strand, within Shewana3_0081 at 96.434 kb on - strand, within Shewana3_0081 at 96.434 kb on - strand, within Shewana3_0081 at 96.492 kb on + strand, within Shewana3_0081 at 96.586 kb on + strand, within Shewana3_0081 at 96.676 kb on - strand at 96.836 kb on - strand at 96.836 kb on - strand at 96.975 kb on + strand at 96.983 kb on - strand at 97.065 kb on + strand, within Shewana3_0082 at 97.111 kb on - strand, within Shewana3_0082 at 97.267 kb on + strand, within Shewana3_0082 at 97.341 kb on + strand, within Shewana3_0082 at 97.346 kb on - strand, within Shewana3_0082 at 97.392 kb on - strand at 97.393 kb on + strand at 97.406 kb on + strand at 97.424 kb on - strand at 97.575 kb on + strand at 97.575 kb on + strand at 97.688 kb on + strand, within Shewana3_0083 at 97.726 kb on + strand, within Shewana3_0083 at 97.726 kb on + strand, within Shewana3_0083 at 97.734 kb on - strand, within Shewana3_0083 at 97.789 kb on + strand, within Shewana3_0083 at 97.948 kb on + strand, within Shewana3_0083 at 98.072 kb on - strand at 98.175 kb on + strand, within Shewana3_0084 at 98.175 kb on + strand, within Shewana3_0084
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 96,046 - Shewana3_0081 0.66 -1.2 96,056 - Shewana3_0081 0.66 -1.1 96,080 - Shewana3_0081 0.67 -3.9 96,095 - Shewana3_0081 0.68 -0.4 96,188 + Shewana3_0081 0.71 -1.0 96,214 + Shewana3_0081 0.72 -0.2 96,434 - Shewana3_0081 0.81 +0.2 96,434 - Shewana3_0081 0.81 -0.2 96,492 + Shewana3_0081 0.83 -0.2 96,586 + Shewana3_0081 0.87 -0.1 96,676 - -2.0 96,836 - -1.3 96,836 - -2.3 96,975 + -0.6 96,983 - +0.0 97,065 + Shewana3_0082 0.13 +0.2 97,111 - Shewana3_0082 0.24 +0.0 97,267 + Shewana3_0082 0.62 +0.2 97,341 + Shewana3_0082 0.80 +1.2 97,346 - Shewana3_0082 0.82 -0.5 97,392 - -0.7 97,393 + +0.2 97,406 + +0.2 97,424 - -0.8 97,575 + +0.2 97,575 + -0.1 97,688 + Shewana3_0083 0.27 -0.1 97,726 + Shewana3_0083 0.34 -0.0 97,726 + Shewana3_0083 0.34 +0.5 97,734 - Shewana3_0083 0.35 -1.0 97,789 + Shewana3_0083 0.45 +0.2 97,948 + Shewana3_0083 0.74 +0.0 98,072 - -0.0 98,175 + Shewana3_0084 0.25 -0.0 98,175 + Shewana3_0084 0.25 -0.0
Or see this region's nucleotide sequence