Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0008

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0006 and Shewana3_0007 are separated by 3 nucleotidesShewana3_0007 and Shewana3_0008 overlap by 34 nucleotidesShewana3_0008 and dnaA are separated by 603 nucleotides Shewana3_0006: Shewana3_0006 - protein translocase subunit yidC (RefSeq), at 6,841 to 8,466 _0006 Shewana3_0007: Shewana3_0007 - hypothetical protein (RefSeq), at 8,470 to 8,724 _0007 Shewana3_0008: Shewana3_0008 - ribonuclease P protein component (RefSeq), at 8,691 to 9,047 _0008 Shewana3_0009: dnaA - chromosomal replication initiation protein (RefSeq), at 9,651 to 11,033 dnaA Position (kb) 8 9 10Strain fitness (log2 ratio) -1 0 1at 8.650 kb on - strand, within Shewana3_0007at 9.372 kb on + strandat 9.486 kb on + strandat 9.526 kb on - strandat 9.609 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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8,650 - Shewana3_0007 0.71 -1.2
9,372 + -0.2
9,486 + +0.1
9,526 - +0.3
9,609 + -0.1

Or see this region's nucleotide sequence