Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4365 and Shewana3_4366 overlap by 8 nucleotides Shewana3_4366 and Shewana3_4367 are separated by 157 nucleotides
Shewana3_4365: Shewana3_4365 - chromate transporter (RefSeq), at 253,250 to 254,617
_4365
Shewana3_4366: Shewana3_4366 - chromate resistance exported protein (RefSeq), at 254,610 to 255,548
_4366
Shewana3_4367: Shewana3_4367 - phage integrase family protein (RefSeq), at 255,706 to 256,713
_4367
Position (kb) 254
255
256 Strain fitness (log2 ratio) -1
0
1
2 at 253.733 kb on - strand, within Shewana3_4365 at 253.777 kb on - strand, within Shewana3_4365 at 253.887 kb on + strand, within Shewana3_4365 at 253.892 kb on + strand, within Shewana3_4365 at 253.895 kb on - strand, within Shewana3_4365 at 253.895 kb on - strand, within Shewana3_4365 at 254.045 kb on - strand, within Shewana3_4365 at 254.282 kb on - strand, within Shewana3_4365 at 254.389 kb on + strand, within Shewana3_4365 at 254.408 kb on - strand, within Shewana3_4365 at 254.412 kb on + strand, within Shewana3_4365 at 254.522 kb on + strand at 254.857 kb on + strand, within Shewana3_4366 at 254.865 kb on - strand, within Shewana3_4366 at 254.941 kb on + strand, within Shewana3_4366 at 255.027 kb on - strand, within Shewana3_4366 at 255.081 kb on + strand, within Shewana3_4366 at 255.218 kb on + strand, within Shewana3_4366 at 255.450 kb on + strand, within Shewana3_4366 at 255.851 kb on + strand, within Shewana3_4367 at 255.851 kb on + strand, within Shewana3_4367 at 255.861 kb on + strand, within Shewana3_4367 at 255.871 kb on + strand, within Shewana3_4367 at 255.879 kb on - strand, within Shewana3_4367 at 256.105 kb on - strand, within Shewana3_4367 at 256.141 kb on - strand, within Shewana3_4367 at 256.191 kb on + strand, within Shewana3_4367 at 256.339 kb on - strand, within Shewana3_4367 at 256.351 kb on - strand, within Shewana3_4367 at 256.421 kb on + strand, within Shewana3_4367 at 256.485 kb on - strand, within Shewana3_4367 at 256.485 kb on - strand, within Shewana3_4367
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 253,733 - Shewana3_4365 0.35 -0.3 253,777 - Shewana3_4365 0.39 +0.1 253,887 + Shewana3_4365 0.47 -0.4 253,892 + Shewana3_4365 0.47 +0.0 253,895 - Shewana3_4365 0.47 -0.0 253,895 - Shewana3_4365 0.47 +0.2 254,045 - Shewana3_4365 0.58 +0.1 254,282 - Shewana3_4365 0.75 +0.8 254,389 + Shewana3_4365 0.83 -0.0 254,408 - Shewana3_4365 0.85 +0.4 254,412 + Shewana3_4365 0.85 +0.7 254,522 + +0.4 254,857 + Shewana3_4366 0.26 +1.5 254,865 - Shewana3_4366 0.27 +0.9 254,941 + Shewana3_4366 0.35 -0.1 255,027 - Shewana3_4366 0.44 +0.7 255,081 + Shewana3_4366 0.50 -0.1 255,218 + Shewana3_4366 0.65 +1.5 255,450 + Shewana3_4366 0.89 -0.1 255,851 + Shewana3_4367 0.14 +1.3 255,851 + Shewana3_4367 0.14 +0.1 255,861 + Shewana3_4367 0.15 +0.0 255,871 + Shewana3_4367 0.16 +0.5 255,879 - Shewana3_4367 0.17 +0.1 256,105 - Shewana3_4367 0.40 +0.1 256,141 - Shewana3_4367 0.43 +0.3 256,191 + Shewana3_4367 0.48 -0.0 256,339 - Shewana3_4367 0.63 -0.2 256,351 - Shewana3_4367 0.64 +0.3 256,421 + Shewana3_4367 0.71 -0.3 256,485 - Shewana3_4367 0.77 +1.8 256,485 - Shewana3_4367 0.77 +0.0
Or see this region's nucleotide sequence