Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4361 and Shewana3_4362 are separated by 163 nucleotides Shewana3_4362 and Shewana3_4363 are separated by 49 nucleotides
Shewana3_4361: Shewana3_4361 - hypothetical protein (RefSeq), at 246,302 to 247,450
_4361
Shewana3_4362: Shewana3_4362 - phosphoadenosine phosphosulfate reductase (RefSeq), at 247,614 to 249,209
_4362
Shewana3_4363: Shewana3_4363 - transposase Tn3 family protein (RefSeq), at 249,259 to 252,246
_4363
Position (kb) 247
248
249
250 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 246.726 kb on + strand, within Shewana3_4361 at 246.770 kb on - strand, within Shewana3_4361 at 246.865 kb on - strand, within Shewana3_4361 at 246.865 kb on - strand, within Shewana3_4361 at 247.120 kb on + strand, within Shewana3_4361 at 247.368 kb on + strand at 247.624 kb on - strand at 247.727 kb on + strand at 247.775 kb on + strand, within Shewana3_4362 at 247.998 kb on - strand, within Shewana3_4362 at 248.241 kb on - strand, within Shewana3_4362 at 248.258 kb on + strand, within Shewana3_4362 at 248.585 kb on - strand, within Shewana3_4362 at 248.617 kb on - strand, within Shewana3_4362 at 248.665 kb on - strand, within Shewana3_4362 at 248.702 kb on + strand, within Shewana3_4362 at 248.741 kb on + strand, within Shewana3_4362 at 248.924 kb on - strand, within Shewana3_4362 at 249.008 kb on - strand, within Shewana3_4362 at 249.057 kb on + strand at 249.178 kb on + strand at 249.310 kb on - strand at 249.409 kb on + strand at 249.439 kb on + strand at 249.577 kb on - strand, within Shewana3_4363 at 249.577 kb on - strand, within Shewana3_4363 at 249.676 kb on - strand, within Shewana3_4363 at 249.756 kb on - strand, within Shewana3_4363 at 249.862 kb on - strand, within Shewana3_4363 at 249.862 kb on - strand, within Shewana3_4363 at 249.900 kb on + strand, within Shewana3_4363 at 250.000 kb on - strand, within Shewana3_4363 at 250.062 kb on - strand, within Shewana3_4363 at 250.084 kb on + strand, within Shewana3_4363 at 250.181 kb on + strand, within Shewana3_4363 at 250.201 kb on - strand, within Shewana3_4363
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 246,726 + Shewana3_4361 0.37 -1.9 246,770 - Shewana3_4361 0.41 -0.0 246,865 - Shewana3_4361 0.49 -0.7 246,865 - Shewana3_4361 0.49 -0.4 247,120 + Shewana3_4361 0.71 -1.5 247,368 + -0.1 247,624 - -0.6 247,727 + -0.4 247,775 + Shewana3_4362 0.10 -0.6 247,998 - Shewana3_4362 0.24 -0.4 248,241 - Shewana3_4362 0.39 -0.7 248,258 + Shewana3_4362 0.40 -0.5 248,585 - Shewana3_4362 0.61 -1.1 248,617 - Shewana3_4362 0.63 +0.1 248,665 - Shewana3_4362 0.66 -0.7 248,702 + Shewana3_4362 0.68 +0.5 248,741 + Shewana3_4362 0.71 -0.3 248,924 - Shewana3_4362 0.82 -0.5 249,008 - Shewana3_4362 0.87 -0.1 249,057 + -1.1 249,178 + -0.4 249,310 - -0.4 249,409 + +0.1 249,439 + -3.0 249,577 - Shewana3_4363 0.11 -0.6 249,577 - Shewana3_4363 0.11 -0.4 249,676 - Shewana3_4363 0.14 -0.0 249,756 - Shewana3_4363 0.17 +0.3 249,862 - Shewana3_4363 0.20 -0.7 249,862 - Shewana3_4363 0.20 +0.5 249,900 + Shewana3_4363 0.21 -0.3 250,000 - Shewana3_4363 0.25 +0.7 250,062 - Shewana3_4363 0.27 -0.5 250,084 + Shewana3_4363 0.28 -1.0 250,181 + Shewana3_4363 0.31 -0.4 250,201 - Shewana3_4363 0.32 -0.9
Or see this region's nucleotide sequence